Ricinus communis (castor bean): 8283976
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Entry
8283976 CDS
T01087
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu00040
Pentose and glucuronate interconversions
rcu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
8283976
Enzymes [BR:
rcu01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
8283976
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
8283976
NCBI-ProteinID:
XP_002519460
UniProt:
B9S0E1
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Position
10:complement(15085892..15090272)
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AA seq
483 aa
AA seq
DB search
MLHISYIVLILLLSSFSSFGLAMWNLTFPTPHPNPEQVVQDVQRRVNASMSRRQMLQISQ
KDQTTCQTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAMGGKNGEYYIVTDSSDDDAV
NPKPGTLRYAVIQEEPLWIVFPSNMLIKLKEELIFNSYKTLDGRGANVHIVGGGCITLQY
ISNVIIHNIHIHHCVQSGDTNVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKD
GLIDAVMGSTGITISNNFFSHHNEVMLLGHSDEYLPDSGMQVTIAFNHFGEKLVQRMPRC
RRGYIHVVNNDFTQWEMYAIGGSGSPTINSQGNRYTAPSNPNAKEVTKRVDTAEGDWKGW
NWRSEGDIMVNGAFFIASGEELEVKYEKAYSVEPKSAALIDLITMHAGVLGVGGRNNNLG
MWSTGANGGGADQELGGSGDDYLDDYSGSSSPVSPPSAYALVSFLTAFSCLISFQSIALT
SML
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgctgcacataagctacattgtcttaattctacttctcagctcattttcttcttttgga
ttggcaatgtggaaccttactttccctactcctcatcccaaccctgaacaagttgttcaa
gatgttcaaagaagagtaaatgcttccatgtcaagaaggcaaatgttacaaatatctcaa
aaagaccagaccacatgccaaacaggaaacccaatagatgattgctggaaatgtgaccca
gactggcccaacaatcgccagaggctagccgattgtgcaattgggttcggacaatatgca
atgggaggcaagaacggtgagtactacatagtaactgactcatcggatgatgatgctgtc
aacccaaagccaggaacattaagatatgcagtaattcaggaggagccactgtggatagtg
ttccccagtaacatgctgattaagctgaaggaggagcttatttttaatagctacaagaca
cttgatggacgtggggctaatgtgcacatcgtgggtggtggctgcattactcttcagtat
attagcaatgttatcattcacaatatacacatccaccattgtgttcagtcaggtgatact
aacgtgcggtcaagccccactcactatggatatcgaacgaagtcggacggtgatggtatc
tccatcttcggatcgaaggacatatggattgatcactgctcactatcacattgcaaggat
ggtctgattgatgcagtgatggggtcgacagggataactatatcaaacaattttttctca
catcacaatgaggtgatgcttttaggacacagtgatgagtacttgcctgattcagggatg
caggtgaccatagcctttaaccattttggagagaagttagtgcaaagaatgccaaggtgt
agaagagggtatattcatgtggtgaataatgattttacacaatgggaaatgtatgctatc
ggaggtagtggtagccctactatcaatagtcaaggcaatcgctacactgccccttctaat
cctaacgccaaggaggtaacgaagagagtggacacagcagaaggggattggaaaggatgg
aattggagatcagaaggagatataatggtgaatggggcattcttcatagcatcaggtgag
gaattagaggttaagtatgagaaagcctacagtgttgagcccaagtctgctgctctcatt
gatcttatcaccatgcatgctggtgtccttggtgttggtggcaggaacaacaacctggga
atgtggagcactggagccaacggtggtggagccgaccaggagttgggcggttcaggcgat
gactacttggatgactactcaggaagcagttctccagtgtcacctccctctgcctacgct
cttgtttcgtttttgactgccttctcttgcttgatatcctttcagagtatagccctgaca
tctatgttatag
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