Ricinus communis (castor bean): 8284183
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Entry
8284183 CDS
T01087
Name
(RefSeq) uncharacterized protein LOC8284183 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8284183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcu03021
]
8284183
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8284183
Transcription machinery [BR:
rcu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
8284183
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
8284183
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
8284183
NCBI-ProteinID:
XP_048230987
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Position
5:31573711..31579359
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AA seq
545 aa
AA seq
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MQQPRFNSYPPSQLPSQIQPINNSNTTAPVNPQASLANLCNMLQNSMPMQMQMQQQPQLG
IIMNPQIQFPFNNNSSVSPFITQNQFGLPQLGFSPLNHLNHLNTVPMFVNQFNPSQLQPQ
QFPFNFPQQLNHNMGFPNLQNMNPPLPIQMPNLSQPVAPHNPNLFPIGHQPNTTQQAKGS
TCSMPQIQNSPHFPSFKQQGNPINNGQNSSSSFKWKRFPNKDFKKNPKQESSKLGYQKSQ
FHHMNNGKRKFGEHNGKGNGYERATKAGRTVPTGQARETKRSPALIYTEQEIKLWREERR
KNFPSKANIEKMCSERVTNSGGIDKEAKLRRERLKEILAKQAELGVEVAEIPSHYLSDSE
KQVKVKKDSRRSAPKKGRSRHKHDRRGRYNKKDGLTQQNTLAKKDSSNGSSFSRTKPTLL
QKLLSAEVRKDKHHLLQVFRFMVMNSFFDDGPEKPLKFPSVVVKEDEVVAEKTSITGKGI
SEVSNKTAVENSGHVGDGDEDDDSADDDGDKHGVRVGQGTSYAKAKFTLDQIDNRTEGEE
GEIID
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaacctcgtttcaattcttatcctccgtctcaacttcccagtcaaattcaaccc
atcaacaacagcaatactactgctcctgttaatccgcaggcttctctagcaaatttatgc
aacatgctgcagaattctatgcctatgcaaatgcaaatgcagcaacaacctcaacttggt
attattatgaatcctcaaattcaatttcctttcaacaataattccagtgtctcacctttc
atcactcaaaatcaatttggtttacctcaactgggtttttctccactgaatcatttaaac
catctgaatactgttcccatgtttgtcaatcaattcaacccatcccaacttcaaccccaa
caattcccctttaatttccctcaacagctcaatcataatatgggtttccccaatctccaa
aatatgaatcctccactgcctattcaaatgccaaatctttctcaacctgttgcccctcac
aatcccaacctttttcctattgggcaccaacctaacacaactcagcaagcaaagggaagc
acatgctcaatgccgcaaattcagaactcaccacactttccttcatttaagcagcagggt
aatcctattaataatggccagaatagtagttcaagtttcaagtggaaaagatttccaaac
aaagacttcaaaaagaatccaaagcaagagtcgtcaaaattggggtatcagaagtctcaa
ttccatcatatgaataatggaaagaggaagtttggtgaacacaatggtaaagggaatggc
tatgagagggccacaaaagctggtcgcactgttcctactgggcaagctagggaaacaaaa
aggtctccggctttgatctacacagaacaagaaatcaaactatggcgtgaagagcgtagg
aaaaacttcccgtcaaaagctaacatagagaagatgtgcagtgaaagggtaacgaactct
ggtggcattgataaggaagccaaactacgtcgagagcggctcaaggagatattagcaaag
caggctgagttgggagttgaagttgcagaaataccatcacactacctgtcagattcagag
aaacaagtaaaggtaaagaaagatagtagaaggtctgctcctaagaaggggagatcccgg
cacaagcatgatagaagaggacgatataacaaaaaggatgggttgacccagcagaataca
ttagcaaaaaaggattcatctaatgggtcttcattcagcagaacgaagccaacacttttg
caaaagcttctgagcgcagaagtaagaaaagataaacaccacttgttgcaggtttttagg
ttcatggtgatgaactctttctttgacgatggaccggagaagcctttgaaatttccttca
gtagtagtcaaggaagatgaggtggtagcagaaaaaacatctattactgggaagggtatt
tctgaagttagcaacaaaacagcagtcgaaaattctggtcatgttggcgatggtgatgaa
gatgatgacagtgctgatgatgatggtgataagcatggggttcgagtgggacaaggaacg
agttatgccaaggcaaagtttactcttgatcaaattgacaacagaactgaaggagaagag
ggagaaatcatagattaa
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