Ricinus communis (castor bean): 8284439
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Entry
8284439 CDS
T01087
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14 isoform X1
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
rcu
Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcu03400
]
8284439
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
8284439
DNA repair and recombination proteins [BR:
rcu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
8284439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
AAA_30
DEXQc_Suv3
T2SSE
Helicase_PWI
IMS_HHH_1
Motif
Other DBs
NCBI-GeneID:
8284439
NCBI-ProteinID:
XP_002514664
UniProt:
B9RLP5
LinkDB
All DBs
Position
4:24844153..24868011
Genome browser
AA seq
2100 aa
AA seq
DB search
MLMQLPRLTNSLREPFDIDQAYLQRKIILQNYHLKPRNNANSLNESELARKIVDRWEEAS
TEVRQAYKQFIGAVVELVDGEVPSEEFREVALTAYRLFAGPGPGEEDIVRSNFLNNKSEL
QKIIGHAFSDAKLQKVATLAQRLYNLQPTNSGAALVPESHVNGTGDDIEFGADLVFQAPA
RFLVDITLEDGELLGDETAGPSSFREGWYDNSDYDRNHFVAKGGTFDLSWLKDACDHIVR
ESTSQLSRDDLAMAICRVLDSDKPGEEIASELLDLVGDSAFDTVQDLISHRSELVDAIHR
GLAILKSDKMASSTQSRMPSYGTQVTVQTESEKQIDKLRRKEEKRHRRGTEHIAENDALA
ARFSSLLQASERKKPIDDLIGSGSGPQSLSVTALPQGTTRKHHKGYEEVIIPSTPTAQLK
PGEKLIEIKELDDFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMIS
ILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTSTFSHRLSPLNMVVRELTGDMQLSK
NELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLR
QVESTQMMIRIVGLSATLPNYLEVAQFLRVNPEAGLFFFDSSYRPVPLAQQYIGISEQNF
AARNDLLNDICYKKVVDSLRQGHQVMVFVHSRKDTAKTADKLVELARNYDDLELFKNDAH
PQFSLVKKEVVKSRNKDVVQLFESAVGIHHAGMLRADRVLTERLFSDGLLKVLVCTATLA
WGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKL
AYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRQNPLAY
GIGWDEVIADPSLSLKQRGLITDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYS
SVETYNEMLRPHMNDSEIINMVAHSSEFENIVVREEEQNELEMMLRMSCPLEVRGGPSNK
HGKISILIQLYISRGSIDTFSLVSDAAYISASLARIMRALFEICLCKGWSEMCLFMLEYC
KAVDRQIWPHQHPLRQFDKDLSTEILRKLEERGADLDRLQEMEEKDIGALIRYPHGGKLV
KQYLGYFLWIQLSATVSPITRTVLKVDLLITPDFIWKDRFHGAAQRWWILVEDSENDHIY
HSELFTLTKRMARGEPQKLTFTVPIFEPHPPQYFIHAVSDSWLHAEALYTISFHNLALPE
ARTMHTELLDLKPLPVTSLGNNAYESLYKFSHFNPIQTQIFHVLYHTDNNVLLGAPTGSG
KTISAELAMLRLFNTQPDMKVIYIAPLKAIVRERMNDWRKGLVSQLGKQMVEMTGDYTPD
LMALLSADIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMR
YISSQTERAVRFVGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKYY
CPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAAADEHPRQFLSMTEE
ALQMVLSQVTDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVN
LPAHLVIIKGTEYYDGKSRRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYK
KFLYEPFPVESSLKEQLHDHFNAEIVTGTICHKEDAVHYLTWTYLFRRVMVNPAYYGLEN
AEPENLSSYLSSLVQNTFEDLEDSGCLKMNEDNVESTMLGMIASQYYLSYMTVSMFGSNI
GPDTSLEVFLHILSGAFEYDELPVRHNEENYNEALSQRVLYMVDKNHLDDPHVKANLLFQ
AHFSQLELPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLLSSITCMHLLQMVMQGLWF
DKDSALWMLPCMNSDLATLLSKKGISTVQHLLALPRATLQAMVGNTLASKLYQDLQHFPC
IKIKLKLEQRDTGDAKSLTLNIKLEKTNSRKSTSRAFVPRFPKIKDEAWWLILGNTSTSE
LYALKRVTFSDRLVTHMDIPSSLTTFQEIKLMLVSDCYLGFEQEHCIEELVKSRGMETGI
NT seq
6303 nt
NT seq
+upstream
nt +downstream
nt
atgcttatgcagctgcctcgcttaacgaactctctgagagagccattcgatatcgaccaa
gcctatctccagcgcaagatcatcctccagaactaccacctcaagcctcgcaataatgca
aattcacttaacgaatcggagctcgcaaggaagatagttgatcgatgggaagaagcctca
acagaagtgagacaagcttacaagcagtttataggggcagtagtggagttagttgatgga
gaagtgccttctgaggagttccgtgaggtggcgctcactgcttatcgccttttcgcggga
ccaggcccgggagaggaggatattgttcgttccaattttctcaataacaaatcagaattg
cagaaaattattggtcatgcattttcagatgctaaactccaaaaagttgccaccctagct
cagaggctttacaatttgcaaccaaccaactctggggctgcacttgttccagagagccat
gtaaatgggactggcgatgatatagagtttggtgcggaccttgttttccaagctccagct
aggtttctagtggatattactttggaggatggggaattgttgggtgatgaaactgctgga
ccttcttcatttcgggaaggatggtatgataatagtgactatgaccgtaatcattttgtt
gctaagggtgggacatttgatttaagttggttgaaagatgcatgtgatcatatagttaga
gaaagtacttcgcagctttcccgagatgatctagcaatggctatatgccgcgtacttgat
tcagataagcctggtgaggagatagctagtgagttgttggatcttgttggggatagtgca
tttgacactgttcaagatcttatatcgcatcgcagtgaacttgttgatgctatccatcgt
ggtttagccatactgaaatcagacaaaatggcttcaagcacccaatcacgtatgccaagt
tatggcacccaggttactgtccaaacagaatctgaaaagcaaattgataaacttcgtcgt
aaggaggaaaagcgacatagacgtggaacagaacacatagctgagaatgatgcattagct
gcaagattttcttctttacttcaagcaagtgagaggaaaaaaccaattgatgatctaatt
gggtctggctcagggccccagtcattgtcagtaactgctcttcctcaaggtactaccagg
aaacatcacaagggctatgaggaagttattatcccttcaacaccaactgcacaactgaaa
cctggagagaagctgattgagattaaggagctggatgattttgctcaagctgcttttcat
ggatacaaatccctgaaccgtatccagagccgaatatttcaaactgtttattatactaat
gagaatatacttgtttgtgcgccaacaggagctggcaaaacaaatatagccatgatatct
attttgcatgagattggacaacacttcagggatggttacttgcacaaagatgaattcaag
atagtttatgttgctcctatgaaggcattagctgcggaggtcacatcaacatttagtcat
cgtttatctccgctgaatatggttgtgagagaacttacaggggacatgcagctgtctaag
aatgaacttgaagaaactcagatgatagtcacaacacctgagaaatgggatgtcattact
cgtaaaagcagtgacatgtcgctttccatgttggtgaagctcctaattattgatgaagtg
catcttttaaatgatgatagaggccctgtgatagaggcacttgttgcaaggacactgcgc
caggtggaatcaacacagatgatgatacgcattgtgggactttcggccactttacccaat
tacttggaggttgctcaatttcttagggtgaatccggaggctggcctcttcttctttgac
tctagttatcgtcccgtgcctcttgcacaacagtatattggaatcagtgagcagaacttt
gcagcccgcaatgacttgttgaatgatatatgttacaagaaggttgttgattcactgaga
caaggtcatcaagttatggtttttgttcactcgcgaaaggatacggcaaaaacagctgat
aaacttgttgagcttgctcgaaactatgatgatttggagctctttaaaaatgatgcccat
ccacagttttccttagttaagaaagaggttgttaagtccagaaacaaagatgttgttcaa
ctttttgaatcagctgttggcattcatcatgctgggatgttacgtgctgatagggttttg
acagagcggcttttctctgatgggctcttgaaggtacttgtttgcacagcaactttggca
tggggtgtaaatctgccagctcacactgttgtaattaaggggacgcaattatatgatcca
aaagctggtgggtggcgagacctaggcatgcttgatgttatgcagatctttggaagggct
gggagacctcaatttgacaagagtggtgaaggcattataattacatctcatgacaagctg
gcctactatctaagattgctgacaagtcaactccccatagaaagtcagtttattagctca
ttaaaagataatttaaacgcagaggtggcattgggtaccgtcactaatgtcaaggaagct
tgcgcttggcttgggtatacttatctttttatcaggatgaggcagaatcctttggcatat
ggcattggatgggatgaggtcattgcggatccttctttgagtttaaagcaaagaggtctt
ataacagatgctgcacgtgctcttgataaagctaaaatgatgcggtttgatgagaaaagt
ggcaacttttattgtacagagcttggccgcatagctagccacttttatatccaatattct
agtgttgaaacttacaatgagatgttgagacctcacatgaatgatagtgagattatcaac
atggttgcccattcctctgagtttgagaatattgttgtccgagaggaggagcagaatgag
cttgagatgatgttgcgtatgtcatgtcctctagaagttaggggtggtccttcaaataaa
catggaaaaatctcaattctcattcagttgtatatatctcgtggctcgattgatactttc
tcattagtctctgacgctgcctatataagtgcaagcttggctcgtatcatgcgtgcattg
tttgagatctgtttgtgcaaaggctggagtgagatgtgtttgttcatgttagagtattgt
aaagctgtagatcgccaaatttggcctcatcaacatccccttagacaatttgacaaagat
ctctcaacagaaatattaaggaagcttgaagaacgaggagctgatttagatcgtctacag
gagatggaggaaaaagatattggagcacttattcgttatcctcatggagggaagttggtc
aagcaatatttaggatattttttgtggatccagttgtcggcaactgtaagtccaatcacc
agaactgttttgaaggtggatttgctcataactcctgattttatatggaaagatcgattc
catggtgctgcccagcgttggtggattcttgttgaggattctgagaatgatcacatctat
cattctgagcttttcactttgaccaagcgcatggcacgaggagagcctcagaaactcacc
tttactgtcccgatttttgaaccacatccaccacaatacttcattcatgctgtttccgac
tcttggctgcacgcggaagctttgtacactatttcattccataatctagcactgccagag
gctcgtactatgcacacagaacttctagatttgaaaccactccctgtgacctctctggga
aacaatgcatacgaatccttgtacaagttttcacattttaaccctatacagacacagata
tttcatgtcctctatcatacggacaacaatgttctattaggagctcccactggaagtggg
aaaactatttctgcagaactggccatgcttcgtcttttcaatactcagcctgatatgaag
gtcatctacatagcacctttgaaggccattgtacgagagagaatgaatgattggagaaag
ggtcttgtctctcagcttgggaaacagatggtggaaatgactggagattatactcctgat
ttgatggccctcttgtcagcagatatcattatatctacccctgaaaagtgggatggtatc
agtcgtaattggcatagtcgaagctatgtgacaaaggttgggcttatgattttggatgag
attcacttattgggagctgaccgtggaccaatccttgaggttattgtatcaaggatgcga
tatatatcatcccaaacagagcgggcagtacgttttgtaggtctttctacagctttggct
aatgctggtgatttagctgattggctgggggttggtgaaattggactcttcaattttaag
ccaagcgtgaggcctgtgccgctggaagtgcatatccagggatatcctggaaagtactac
tgccccagaatgaatagcatgaacaaaccagcttatgctgcaatatgcacgcattcacct
acaaaaccagtactcatatttgtatcatctcgtcgccagacaaggcttactgcgcttgac
cttattcagtttgcagctgctgatgagcatccaaggcagtttttgagtatgacagaggaa
gcacttcagatggttctttcccaggtcactgatcagaatctgaggcacaccttacagttt
ggaattggtttacaccatgcaggattaaatgacaaagacagatctctggttgaggaactt
tttgcaaacaacaagatccaggtgttggtatgtacaagcacgctcgcttggggtgtgaat
cttcctgctcatctggttattatcaagggaacagaatattatgatgggaagtcaaggaga
tatgttgattttcctatcaccgatatcttgcaaatgatgggccgtgcaggccgcccacaa
tatgatcagcatgggaaagcagtcattcttgttcatgaacccaaaaagagcttctataaa
aagtttctgtatgaaccatttcctgttgagagtagtctgaaggagcagttacatgatcac
ttcaatgcagagattgttactggtacaatttgccataaagaggatgcagtgcattatctt
acgtggacatacttattccgtagagtgatggttaatccagcctactatggtctagagaat
gcagaacccgaaaatctgagttcttatttgtccagtttagtgcaaaatacatttgaggat
cttgaagacagtggatgccttaagatgaatgaagataatgtggagtctacaatgttgggc
atgatagcatcgcagtattaccttagttacatgactgtatcaatgtttgggtcaaatata
gggccagatacatctcttgaagtttttttacatattctatctggtgcatttgaatatgat
gaacttcctgtgcggcacaatgaggaaaattataatgaagcactgtctcagagagttctt
tatatggtggacaagaatcacttagatgatccacacgtcaaagcaaatctgctatttcag
gcacatttttcccagttagagttgccaatcagtgactatgtaacagatttgaaatcggtg
ttggatcaaagtatacgcattatacaggcgatgatagatatttgtgcgaacagtggatgg
cttttaagctcaattacttgcatgcatcttctgcaaatggtcatgcagggtttgtggttt
gataaagattctgccctgtggatgttgccatgcatgaattctgatcttgccacattatta
agcaaaaaaggaatctctactgtgcagcatcttctggctcttcctagggcaactttgcag
gctatggttggaaatactctggcgtcaaaattatatcaggatctgcagcattttccatgc
attaagatcaagttaaaacttgagcaaagggacactggcgatgcaaagtctctgactctg
aatatcaaattggagaaaaccaattccaggaaaagcacgtcaagggcttttgttcctcga
ttccctaagataaaagatgaagcatggtggttaattctgggtaacacgtctacctctgaa
ctatatgctctgaagagagtaactttctctgatcgcttggttactcatatggatatacca
tcatcattgacaactttccaggagataaagttgatgttagtttcagattgttacctcggt
tttgaacaagaacattgcattgaagaactagtcaaatctcggggaatggaaacaggaata
tga
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