Ricinus communis (castor bean): 8284493
Help
Entry
8284493 CDS
T01087
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
8284493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8284493
03009 Ribosome biogenesis [BR:
rcu03009
]
8284493
04131 Membrane trafficking [BR:
rcu04131
]
8284493
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rcu04147
]
8284493
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
8284493
Ribosome biogenesis [BR:
rcu03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
8284493
Membrane trafficking [BR:
rcu04131
]
SNARE
SNARE associated proteins
Others
8284493
Autophagy
Aggrephagy
Other aggrephagy associated proteins
8284493
Exosome [BR:
rcu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
8284493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_33
AAA_5
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_28
Mg_chelatase
AAA_17
ATPase_2
Parvo_NS1
AAA_18
IstB_IS21
ABC_tran
Viral_helicase1
NACHT
AAA_7
Vps4_C
NB-ARC
AAA_24
TsaE
DUF815
AAA_lid_PRS2_C
Zeta_toxin
Sigma54_activat
Sigma54_activ_2
Zot
Motif
Other DBs
NCBI-GeneID:
8284493
NCBI-ProteinID:
XP_002519500
UniProt:
B9S0I1
LinkDB
All DBs
Position
10:complement(14834695..14839293)
Genome browser
AA seq
806 aa
AA seq
DB search
MSNQAESSDSKGTKRDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPETMEKLQLFRGD
TILIKGKKRKDTICIALADDSCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCV
VAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDN
PEAMEEDVEDDVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFSE
ATGAAAGADPFAASAGGEADDDDLYS
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaccaagccgaatcatctgactccaaagggacaaaaagggattttagtactgcg
attttagagcgaaagaagtcaccaaatcggcttgttgttgatgaagctattaatgatgat
aactccgttgtttctcttcatcctgaaactatggagaagctccagctctttcgtggtgac
acgatcttgattaagggaaagaaaaggaaggatactatctgcattgctcttgctgatgac
tcttgtgacgagccaaagatcaggatgaacaaggttgtgaggtcaaacctgagagttagg
cttggagatgttgtctctgttcaccagtgtcctgatgtcaaatatggaaagcgtgtgcac
atactccctattgatgatacaattgaaggagtcactggaaatctatttgatgcatacttg
aaaccttatttcctggaggcatatcgcccagtcaggaagggtgatctcttccttgtgagg
ggaggaatgagaagtgtggaattcaaagttattgagactgaccctgcggagtactgtgtg
gtcgcccctgacactgagattttctgtgagggtgagcctgtgaggagagaagatgagaat
agattggatgaagttggctatgatgatgttggtggtgttagaaaacagatggctcagatt
agggagctggtggagcttccactaagacatccacagctattcaaatcaattggtgttaag
ccaccaaaaggaattttgctatatgggcctcctggttctgggaagactcttattgcccgg
gctgttgccaatgaaactggtgctttcttcttctgtattaatggacctgagatcatgtca
aaattggctggggagagtgaaagcaaccttcgaaaagctttcgaggaagcagagaaaaat
gcaccatctatcatttttattgatgagattgattcaattgcccccaagagggagaagaca
catggagaggtggagaggaggatagtctcacagcttttaacacttatggatggacttaaa
tctcgtgcgcatgttattgtcattggggccacaaatcgccccaacagcattgaccctgct
ttgagaaggtttggcagatttgatagggaaattgatattggtgtaccagacgaagttggg
cgacttgaagttctcagaatccatacgaagaacatgaagcttgcagaagatgttgatttg
gaaagaatttccaaagacacgcatggttatgttggtgctgatttggcagctctgtgcact
gaggctgcacttcaatgcatcagggagaagatggatgtgatcgacttagaagatgaaaca
atagatgctgagatacttaactctatggcagtgagtaatgaacacttccaaactgcactt
ggaacaagtaacccatctgctctgcgcgaaacagttgttgaagtgcctaatgtgagttgg
gaagatattggaggccttgagaatgttaagagggagcttcaagagactgttcaatatcca
gtggagcaccctgagaaattcgagaaattcggaatgtcaccttctaagggagttcttttc
tatggccctcctggatgtgggaaaactcttctggctaaagctattgccaacgagtgccag
gcaaatttcatcagtgtgaagggtcctgaattgctgacaatgtggttcggtgagagtgaa
gccaacgtccgagaaatttttgacaaggctcggcaatctgctccttgtgttctcttcttt
gatgaacttgactcaattgctactcagagaggaagcagtgtgggagatgctggcggtgct
gctgatagggttttgaaccagcttcttacagagatggatggcatgtctgcaaagaaaact
gtttttataattggggccactaatagacctgatatcatagaccctgcacttttgcgtcct
ggccgtcttgatcagttgatttacatccctcttcctgatgaggactcgcgacaccaaatt
ttcaaggcttgcttaaggaaatcaccagtctccaaagatgttgacctcagagcacttgcc
aagtatactcagggcttcagtggtgctgatatcactgaaatatgccagcgcgcatgcaaa
tatgctataagagagaatattgaaaaggacattgaaagggagaggaggcgaagggataat
ccagaagctatggaggaagatgttgaggatgatgtggcagagatcaaggcggcacacttc
gaggagtccatgaagtatgcccgcaggagtgtgagtgatgcagacattcgcaaataccag
gcatttgctcagactttgcaacaatcaagaggctttggatcagaattcaggttttctgaa
gctactggtgcagctgctggagctgatccatttgcagcttcggcaggtggggaggcggat
gatgacgatctatacagttag
DBGET
integrated database retrieval system
