Ricinus communis (castor bean): 8285421
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Entry
8285421 CDS
T01087
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8285421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8285421
03012 Translation factors [BR:
rcu03012
]
8285421
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8285421
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
8285421
Translation factors [BR:
rcu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
8285421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
T2SSE
AAA_19
ATPase
AAA_16
PhoH
Motif
Other DBs
NCBI-GeneID:
8285421
NCBI-ProteinID:
XP_048231540
LinkDB
All DBs
Position
6:complement(4714191..4740054)
Genome browser
AA seq
1127 aa
AA seq
DB search
MRNSKLGAFLVGLANNNRILNSTTRRPASALFFIRRPFSSYAAEQFSDDDYECDFGTHKA
SSSVSNIDEWKWKLSLLLRSETDQEIVSRDRKDRRDYEQISNLAKRMGLYSEMYGRVVVA
SKVPLPNYRPDLDDKRPQREVVIPLSLQRRVESLLQEHLDRTQLSSQEVSDCAADTTSLN
QVEDENPESFLDGSVMEKILQRRSLRMRNMQRAWQESPEGRKIMDFRKSLPAFKEKEKLL
QAIARNQVIVVSGETGCGKTTQLPHYILESEIESGRGAFCSIICTQPRRISAMAVADRVS
AERGEPLGETVGYKVRLEGMKGKDTHLLFCTSGILLRRLLSDRNLTGITHVFVDEIHERG
MNEDFLLIVLKDLLPRRQDLRLILMSATLNAELFSNYFGGAPKIHIPGFTYPVRAHFLED
VLEMTGYKLTSFNQIDDYGQDKMWKTQRQLAPRKRKNQIATLVEDALNKSSFESYSSRAR
DSLACWMPDCIGFNLIEAVLCHICRKERPGGVLVFMTGWEDISCLRDQLKAHPLLGDPNR
VLLLTCHGSMATSEQKLIFERPPSNVRKIVLATNMAEASITINDMVFVVDCGKAKETTYD
ALNNTPCLLPSWISQASACQRRGRAGRVQPGECYHLYPKCVYEAFAEYQLPELLRTPLNS
LCLQIKSLQVESIAEFLSAALQPPEPLAVQNAIGFLKMIGALDEKENLTNLGKFLSILPV
DPKLGKMLIMGAIFRCFDPVLTIVSGLSVRDPFLLPQEKKDLAGTAKSRFSAKDYSDHMA
LVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILKEAGLVDADAGANNR
LSHNQSLVRAIICSGLYPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLV
FGEKVKVNTVFIRDSTGVSDSILILFGGALSCGVQAGHLKMLEGYIDFFMDPNLAECYLN
LKEEVDKIIQKKLQDPTLDIHKEGKYLLLAVQELVSGDQCEGRFVFGRESKKPKESSESR
FTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKKNKQLAER
DAAIEALAWLTHTSDSSQEENEKSQPDVTDNMLKLLGKRRRSKRHAG
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaattccaagttaggagctttccttgttggtttggccaataacaatcgcatactt
aattcaacaacacgacggcctgcttctgctctgtttttcattcgccgccctttctcaagt
tatgctgctgagcagttctctgatgatgattacgagtgcgatttcgggacccataaggca
tcttcttctgtatcaaatattgacgagtggaagtggaagctcagcttgttattgcgtagc
gaaactgaccaagaaattgtgtccagagatagaaaggatagaagggactatgagcaaatt
tccaatcttgctaaaaggatggggctttacagtgaaatgtatggacgagtggttgtcgct
agcaaagttcctcttcccaactacaggccggatttggatgacaagcgtcctcaaagagag
gtggtaatcccattaagcttacaaaggagggtagagagtttacttcaggaacatcttgat
agaactcaactaagttctcaagaagttagtgattgtgcagctgatactacatctcttaat
caggttgaagatgaaaatccagagtcttttctagatggctctgttatggaaaaaattctt
cagagaaggagtttaaggatgcgtaatatgcaaagggcatggcaggaatcacctgaaggc
aggaagataatggacttccgcaaatccctacccgcattcaaggaaaaggaaaaattgctc
caagcaatagcaaggaatcaggtcatagttgtatctggggagactggatgtggtaaaaca
actcaacttccccattatatattggagtcagaaatagaatctgggcgtggagcattctgc
agtataatttgcacgcaacctcgaagaatatctgctatggctgttgcagatagggtgtct
gcagagagaggagagccacttggtgaaacagttggttataaagttcgactggaggggatg
aaaggaaaagatactcatctgcttttctgtactagtggaattttacttagacgactgcta
agtgacagaaacttgactggtataacccatgtttttgtcgatgaaattcatgagcgaggc
atgaatgaagacttcctattgattgtactcaaggatctgcttccacgccgtcaggacttg
agattgattttaatgagtgccactttgaacgcagaactcttttccaactattttggtgga
gcaccaaaaattcatattccgggctttacatatccagtgagagcacactttttagaagat
gtactggaaatgactggatataagttgacttcttttaatcaaattgatgattatggacaa
gacaaaatgtggaaaacacagaggcagcttgcaccacggaaaaggaaaaaccagattgct
actcttgttgaggatgctcttaacaaatcaagttttgagagttatagctccagggcacgt
gattcgctagcatgctggatgcctgattgcataggatttaaccttattgaggcagtactc
tgccatatatgtaggaaggaacgacctggtggtgtcttggtattcatgactggctgggag
gatattagctgtttgagggatcaacttaaagctcatcctcttttgggagatccaaacagg
gtgctgcttttaacatgccatggctctatggcgacctctgaacagaaactcatatttgag
aggcctccttctaatgtacgtaaaatagttcttgccactaatatggcagaggcaagtatc
acaatcaatgacatggtttttgtggttgattgcggaaaagctaaagagaccacttatgat
gctttgaacaatacaccttgtttgctgccatcatggatatcacaagcatctgcatgtcaa
agaagaggtcgggctggtcgtgtgcagccaggtgaatgttatcacctctaccccaaatgt
gtttatgaagcttttgctgaatatcaacttcctgaactactgagaactcccttaaactct
ctttgcttgcaaataaaaagtttacaggttgaaagtatagcagaatttttgtcagctgct
ctccaaccaccggaacctttggctgttcaaaatgccattggttttttgaagatgatcggt
gcattagatgagaaggaaaatctgactaatcttgggaagttcttgtcaattcttccggta
gatcccaagctagggaaaatgctaatcatgggtgctatctttcgttgctttgaccctgta
ttaacaatagtatctggtctgagtgtcagggatcctttccttcttccccaagagaaaaag
gatttggctgggacagcaaagtctaggttttctgcaaaagactacagtgatcacatggct
cttgttcgtgcatatgaaggttggaaagatgcagaaagagaagggtcagcatatgaatat
tgctggagaaatttcctttctgcccaaactctacaggccatccattctctaaggaaacaa
tttagctttatcttgaaagaagctgggttagtagatgcagatgcaggagcaaataacaga
ttaagtcacaaccagtcattggttcgtgcaatcatatgctcaggtctctatcctggcatt
gcatcagttgtgcacagagaaacatccatgtctttcaagactatggatgatggtcaagta
ctactatatgcaaattctgtgaatgcacgctatcagacaattccttacccatggctggtt
tttggtgaaaaagtcaaggtcaatacagtttttatccgtgattctactggtgtatcggat
tcaattctgattctttttggtggtgctcttagttgtggcgtgcaggctggtcatctgaaa
atgctggaagggtatatcgatttcttcatggatcctaatttggcagagtgctatttgaac
cttaaggaagaagtcgataagatcattcaaaagaagcttcaagatcctactcttgacatt
cataaggaagggaaatacctcttgcttgctgttcaagagctggtgtcaggagatcaatgt
gaagggagatttgtctttgggcgtgaaagcaagaagcctaaggagtctagtgaaagcaga
tttacgaaagatggaacaaatccaaagagcttactacaaacacttttgatgagagctggg
cactcccctccaaaatacaaaacaaagcaccttaagacaaatgagtttagggcactggtt
gaatttaagggaatgcaattcgttgggaaaccgaagaaaaataaacaattggcagagagg
gacgctgccatagaggcattggcctggttgacgcatacctctgatagcagtcaagaagag
aatgagaagtcccagcctgatgtcactgacaacatgttgaaacttcttgggaaacgccga
agatcaaagcgtcatgccggttga
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