Ricinus communis (castor bean): 8285454
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Entry
8285454 CDS
T01087
Name
(RefSeq) heterogeneous nuclear ribonucleoproteins A1 homolog
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03015
mRNA surveillance pathway
rcu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8285454
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
8285454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8285454
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
8285454
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
Motif
Other DBs
NCBI-GeneID:
8285454
NCBI-ProteinID:
XP_015572237
UniProt:
B9RMS1
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All DBs
Position
7:27692210..27697646
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AA seq
644 aa
AA seq
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MADEQIDYEDEEYGGAQKLQYQGSGAIPALAEEEMGEDDEYDDLYNDVNIGENFLQMHRS
EAPPAPPSVGNGGFQPRNSNDLRVESGGSQGLNIPGVAVESKYSTGTHFPEQNVKGPEIG
SVGYPDGSSIAQKTRVMEMTNDSQARNMGFQGSTSGPSNIGVDPSDMNNKISNDPTPVPN
AGVPRVIPQLPASQMNMNMDTNRSATNENQIRPPLENGSTMLYVGELHWWTTDAELENVL
SQYGMVKEIKFFDERASGKSKGYCQVEFYDAAAAAACKEGMNGHLFNGRACVVAFASQQT
LKQMGASYMNKNQGQPQSQNQGRRPMNDGAGRGGNMNYQGGDAGRNFGRGGWGRGGQGIL
NRGPGGGGRMGGRGGSMGAKNIVGGAGGVGSGANGGGYGQGLAGPAFGGPAGAMLPPQSM
MRAGFDPTYMGRGAGYGGFAGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFGRGMAPNGM
GMMGPSGMDGPNAGMWSDTSMGGWGEEPGRRTRESSYGGDDGASEYGYGEVNHEKGARSS
AASREKERASERDWSGNSDRRHRDDREHDWDRSEREHKEHRYREEKESYRDHRQRERDSG
YEDDWDRGQSSSRSRSRSRAVPEEDYRSRSRDADYGKRRRLPSE
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgagcaaatagattatgaagatgaggagtatggaggagctcagaagttgcaa
tatcagggaagtggtgcaatacctgcacttgcagaggaagagatgggagaagatgacgaa
tatgatgatctttacaatgatgttaatattggggagaattttctacagatgcaccgatct
gaggctccgccagcacctcctagtgtgggcaatggaggattccaacctcggaattctaat
gatttaagagttgaatctggtggttcacaaggattgaacatccctggggttgcagttgaa
tcaaaatactctactggaacacattttcccgagcagaatgttaaggggccagaaattgga
tctgttggttacccagatgggtcttctattgcacaaaaaacgagggttatggagatgact
aatgattctcaagcccgaaatatggggtttcagggatcaacatcggggccctccaacatt
ggagtcgatccttctgatatgaataataaaatttccaatgaccccacacctgtgccaaat
gctggggttcctcgagtcattccacagttgccagctagccaaatgaatatgaatatggac
accaatcgatcagcaactaatgaaaatcagatccggccacctttagagaatggttcaact
atgctgtatgtgggagaattgcattggtggacgactgatgcagagcttgagaatgtttta
tctcaatatggaatggtcaaggagataaagttttttgatgagagagctagtggtaaatct
aaaggctattgccaagttgaattttatgatgcagctgctgcagctgcatgcaaagaggga
atgaatgggcatcttttcaatgggcgagcttgtgtagtggcctttgcttctcaacaaaca
ttaaagcagatgggtgcttcttacatgaacaaaaaccagggccagcctcagtcacagaat
cagggaaggaggcctatgaatgatggtgcaggaagaggtggtaacatgaattatcaaggt
ggagatgctggaaggaactttggaagaggtgggtggggacgaggtgggcagggaattctt
aacagaggtcctggtggtgggggacgcatgggaggaagaggaggatccatgggtgctaag
aacatcgttgggggtgctggtggagttggaagtggtgccaatggtggtggctatggacaa
ggtcttgcaggtcctgcttttggtgggcctgctggtgctatgttgcctccgcagagtatg
atgcgagctggatttgatccgacgtatatgggcagaggagctggttatggaggatttgca
ggtcctggttttcctggcatgcttccttcatttccagctgttaatgcaatgggccttgct
ggggttgctcctcatgtcaacccagccttctttggccgtggaatggcacctaatggcatg
ggaatgatgggtccctctggaatggatgggcctaatgctggaatgtggtctgacacaagc
atgggtggatggggagaagaacctgggcgaagaacaagggagtcaagttatggcggtgat
gatggggcttctgagtatggctatggggaggtgaatcatgaaaaaggggcaaggtcaagt
gctgcctcaagggaaaaggagcgagcttctgagcgtgactggtcagggaactctgatagg
aggcatcgtgacgaccgggaacatgattgggacaggtctgaaagagagcacaaggagcac
agataccgagaagaaaaagagagttatcgggaccatcgacaaagagagcgtgactccggt
tatgaagatgattgggatagagggcagtcttcttcaagatctcggagcagatcccgtgca
gtgcctgaagaagattacaggtctcgatcaagggatgctgattatggcaaaaggagacgc
ctaccatcagagtga
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