Ricinus communis (castor bean): 8285492
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Entry
8285492 CDS
T01087
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
8285492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rcu04131
]
8285492
Membrane trafficking [BR:
rcu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
8285492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
Clathrin
VPS8_N
Beta-prop_EML
TPR_VPS8_2
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
ANAPC4_WD40
Beta-prop_RIG_2nd
WD40_WDHD1_1st
WD40_Prp19
zf_RING_Vps8
Beta-prop_HPS5
zf-RING_Vps41
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
8285492
NCBI-ProteinID:
XP_015572370
LinkDB
All DBs
Position
1:complement(9866019..9876548)
Genome browser
AA seq
1916 aa
AA seq
DB search
MTKKLTTTKFPTELDLDSFLGLHSDFDDDDSAAVPHRTLDEILNDSDSSTSLSPPSSPAS
LSNLPQNDAISQDSTESLNRTQSQLLGDRLDQARHSSFTRGGFLGDPVWRAPSSSSSRPL
PSLFGGVRSNAKPGAALAAAAAASRSVPTPHAAAIKSRRAVTLQKVMDSGDDHEIVSNSS
FVASERMESDDKLAEIDDLDSTTGEVFDSNSKVLEGEVEDTEAAPLNTEGLSITNNDQNL
LNNNTSTSNVNVKLDLNDDSILGSYDRKDEAMAMDIPASSRDDDYESNEMPLEDGDNLEK
GKDDESGDGDASSLSDISDLVEERIGKLESERIIKNAEKKLKENTMKPLELAEELEKKQA
STGLHLEEGAAAQPMKLEGVRRGSTTLGYFDIDANNAITRTIMSQTFRRDHGSPQVLAVH
LNHIAVGMGKGVIAVVPSRYSPYNGDNMDSKMLMLGLQGDRSYAPVTSMCFNQQGDLLLA
GYGDGHITVWDIQRASVAKVITGEHTAPVVHALFLGQDSQVTRQFKAVTGDSKGHVYLHS
FSVVPLLNRFTIKTQCLLDGQRTGIVLSASPLLFDESSGGALPSSQGNASVSSSSIGNMM
GGVVGGDAGWKLFNEGSSPVEEGVVIFVTHQTALVVRLTPTLEVYAQLSKPDGVREGSMP
YTAWKCTSQSHSSEYENISADAAERVSLLAVAWDRKVQVAKLIKSELKVYGTWSLDSAAI
GVTWLDAHMLVVLTLTGQLYLFAKDGTVIHQTSFAVDGSGGDDLVAYHTHFINIYGNPEK
AYHNSLAVRGASVYILGPTHLVVSRLLPWKERIQVLRRAGDWMGALNMAMTLYDGQAHGV
IDLPKSVDAVQETIMPYLVELLLSYVDEVFSYISVAFCNQIGKVEQQDESKTGGSSVHSE
IKEQFTRVGGVAVEFCVHIHRTDILFDEIFSKFMAVQHRDTFLELLEPYILRDMLGSLPP
EIMQALVEHYSSRGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYGALVYLFNKGLDDF
RAPLEELLIASRNSHKESAAALGYRMLVYLKYCFSGLAFPPGQGALPPKRLPSLRTDLVQ
FLLEKSSALNSVVDSTLSSRRTYLNLYHLLELDTEATLDVLRLAFLDDENPKSDFSSDEN
ANVDIEAEQDNIANESQILLAQNAVDALVQIIEKDIPQTAESASADDTGLVEAWPSKKDI
GNLFEFIAYHVACRKARVSGSVLSQILEYLTSESNFYASIHAHDIQTSKRREKQVLALLE
VVPETDWNSSYVLQLCEKAQFHQVCGFIHTIRNQHLAALDCYMKDVDEPIHTFSYIYNIL
RQLTNNEHNAFQSAIMSKIPELVVLSREGTFLLIRDHFQNDSPRILSRLQSHPKSLFLYL
KTVIEVHLSGTLNFSRLKKDDSVDAFSGRRVEDQLKGLEAYLERISDFPKFIRNNPVNVT
DDMIELYMELLCQYERNSVLKFLETFESYRVENCLRLCQEYEITDAAAFLLERVGDVGSA
LLLTLTQLNDKFVNLDIAVESLISTSLSSSIGTDQYGNVLRIKEVDDIYSILNVCIGLCQ
RNTPRLQPEESETLWFKLLDSFCAPLMDSFTDKRVSKRDDHAGMLTEALGEHEDDEAIIK
WKISKSHKGAHILRKLLSQFIKEIVEGMIGYVHLPTIMSKLLSDNGNQEFGDFKITILGM
LGTYGFERRILDTAKSLIEDDTFYTMSLLKKGASHGYAPRSLVCCICNCPLTKDSPSFRI
RVFSCGHATHLQCELLESETSSKGSLSGCPICMPKTNTQRPRNKSVLGENGLVNKVSSRA
KRAHGTGTLHSHEDSSDNSYGLQQMSRFEILTNLQKDQRLVQIENMPQLRLAPPAVYHER
VKKGPEVLTGESSSAIAKRIEKSSKRRQLRELKVTGSSLRFPLKSSIFGKEKINKR
NT seq
5751 nt
NT seq
+upstream
nt +downstream
nt
atgactaaaaaactcacaaccaccaaattccctacagaactcgacctcgattccttccta
ggcttacactctgatttcgacgacgacgactccgccgctgtccctcaccgtacactcgat
gaaatcctcaacgactccgattcttccacgtcactctctcctccttcatcccccgcatcc
ctgagtaatctccctcaaaacgacgccatttcacaggattctacagaatctcttaatcgc
actcaatctcaacttttaggtgacaggcttgaccaagcacgacatagttcctttactcga
ggcgggtttttaggtgatccggtatggagagctccctcttcgtcttcttcaagaccgtta
ccgtctcttttcggtggtgtgagatcgaatgcgaagccaggtgctgctcttgcggctgct
gcggcagcatcgagatccgtaccgacacctcatgctgctgcgatcaaatcgaggagggcg
gttactcttcagaaggttatggatagtggcgatgatcatgaaattgtttctaattcatca
tttgttgcttcggagagaatggagtcagatgataaattagcagaaattgatgatttggat
agtacaacgggtgaggtttttgatagtaatagtaaagtcttggaaggtgaagtagaagat
acagaagcagctccacttaatactgagggattaagtatcacaaataatgatcaaaatctg
ttaaataacaatacttcgacctccaatgtaaatgttaaattagatttgaatgatgactcg
attttaggttcctatgatagaaaagatgaagccatggcaatggatattccggcttcttct
agggatgatgattatgaaagtaatgagatgccactggaagatggagataatttggagaaa
ggtaaagatgatgagtctggtgatggtgatgctagttctttaagtgacatttcggacctt
gttgaggagagaattgggaaattggagagtgagaggataattaaaaatgctgaaaagaag
ctcaaagaaaatactatgaagccacttgaattggctgaagagcttgagaagaaacaagct
tctactggattgcatttggaagaaggtgcagctgctcagccgatgaagcttgagggtgtt
cggagagggtctactactttgggttactttgatattgatgctaataacgccattacacgg
acaattatgtctcaaacctttcggcgggatcatggttctccacaggttctggccgttcat
cttaaccacattgctgtaggaatgggaaaaggtgtcattgccgttgttccaagtagatac
tcgccttataatggtgataatatggattcaaagatgcttatgcttggtttacaaggggat
agatcttatgccccagtaacttccatgtgcttcaatcagcaaggggacctcctgttggct
ggttatggtgatggtcacattactgtttgggatatccagagagcgtcagtagccaaagtt
ataactggagagcatacggcaccagtggtacatgcactatttctaggtcaggattctcaa
gttacccgtcaatttaaagcagttactggtgatagtaaaggtcacgtttatttacattcg
ttctcagtggttcccttgcttaacagattcaccatcaagacacagtgtcttcttgatggg
caaaggacgggtattgtactatcagcttcaccccttctttttgatgaatcctctggaggt
gctttgccatcatcacagggaaacgcttcagtttcatccagcagcattggtaacatgatg
ggaggtgtagttgggggagatgcaggatggaagctattcaatgaaggctcttctccagtt
gaagaaggtgtggtcatttttgtcacccatcaaactgctttggtggttaggctcactcct
actttagaagtctatgcacaactttcgaagccagatggagtcagagagggttccatgcct
tacacggcatggaaatgcacttcacaatcacacagctcagaatatgaaaatattagtgca
gatgcagcagaacgagtttcattgcttgcagttgcatgggatcggaaagtccaagttgca
aagttgataaaatcagagcttaaagtatatggaacatggtctcttgacagtgcagccata
ggcgtcacttggttggatgctcatatgctggtggttctcacattgacaggacagctttat
ttgtttgcaaaggatggtactgtgattcaccagactagctttgctgttgatggttctggt
ggagatgatcttgttgcatatcatactcacttcataaatatctatgggaatcctgagaaa
gcctatcacaatagcctagcagtaagaggtgcttctgtatacatacttggacccacacat
cttgtcgtttcccggcttcttccgtggaaggaacgaattcaggttctgcggagagcaggt
gactggatgggtgccttgaatatggcaatgacactttatgacggacaagctcatggtgtt
attgaccttcctaaatctgtggatgctgtacaagaaaccataatgccctatctggtagag
ctgctattgtcgtatgtagatgaagtattttcttatatatcagtagctttctgcaaccaa
attggaaaagtagaacagcaagatgaatcaaagaccggaggcagttctgtgcactctgaa
ataaaagaacaattcactcgcgttggtggtgttgcagtagaattttgtgttcatatacat
cgaactgacatccttttcgatgaaatcttctctaagtttatggctgttcaacacagagat
acctttttggagcttctggagccatatatactgagggatatgcttggatccctaccccct
gagattatgcaagcgctagtagagcattatagcagcagagggtggttgcagcgagttgaa
caatgtgttcttcacatggacatttcttccttggatttcaatcaggttgtcaggctgtgc
cgggagcatggattatatggggcgttggtgtatcttttcaataaaggattggatgatttc
agagcacctttggaggagttactaattgcttcacggaacagtcataaagagagtgctgct
gccctcgggtataggatgcttgtttacttgaagtattgcttttcaggtcttgccttcccg
ccaggacagggagctcttcctccaaaacgtttgccatcccttaggacagaccttgttcag
tttctattggagaaatccagtgccctgaattcagtagtagattcaaccttgtcatcgaga
cgaacatacctgaacctgtatcatctcttagagctagatacagaagctactttagatgtt
ctgaggttggcttttctagatgatgaaaatccaaagtctgacttctcttcagatgaaaat
gccaatgtagatattgaggctgagcaagataatattgcaaatgaaagtcaaattttattg
gctcaaaatgctgtagatgctcttgttcaaatcattgaaaaagatatacctcaaacagct
gagtctgctagtgctgatgatactggattagtagaagcatggccttcaaagaaagacata
gggaacctgtttgaattcatagcatatcatgttgcatgtagaaaagctcgtgtttcgggc
agtgtattgagtcagattttggaatacttaacatcagagagcaatttttatgcaagtatt
catgcacatgatatccaaacttcaaaaaggagggagaagcaggtgcttgcgcttctggaa
gtggtgcctgagactgattggaattcatcttatgtgttacagctatgtgagaaagctcaa
tttcaccaggtttgtggctttattcataccatcagaaaccagcatcttgctgcattggat
tgctatatgaaagacgtggatgaacccattcatactttctcctatatctacaacatattg
agacagcttactaacaatgaacacaatgcttttcaatcagctattatgtctaagattcca
gagttggttgtcttaagcagagaggggacattcttgctgatcagggaccattttcagaat
gatagtccacgcatcctctctcgactacaatcgcatccaaagagcctttttctgtatctg
aagacagttattgaggttcacttatctggaaccctcaatttttctcgtttgaaaaaggat
gatagcgttgatgcttttagtggaagaagagtggaagatcagttgaaaggacttgaagct
tacttggaaagaatatctgattttcccaagtttattcggaataaccctgttaacgtgact
gatgatatgatagagctttatatggagttgttatgtcagtatgagcgtaattcagttctc
aaattcctggagacttttgaaagctaccgggtagaaaactgtttacgcctatgccaggaa
tatgagataacagatgctgctgcttttttattagaaagggttggtgatgttgggagcgcc
cttttgctcactcttactcagctcaatgataaatttgttaaccttgatatagctgtggaa
agtctgatttcaacatctttgagtagctctattggcacagatcagtatggcaatgttcta
agaataaaagaggttgatgacatatacagtatattgaatgtgtgtattggattgtgtcag
cgaaacacccctcgtttgcaacctgaggaatcagaaacactctggttcaaattacttgat
tcgttttgtgcgcctttgatggattcatttactgacaaaagggtatcgaaacgagatgat
catgctggaatgctaactgaagcattgggtgaacacgaggatgacgaggccataattaag
tggaaaatctccaagtctcacaaaggtgctcatatcttgagaaaattgttatctcagttc
atcaaagagattgttgaaggaatgataggatatgttcaccttccaactatcatgtcaaaa
ctcctctctgataatggtaaccaggaatttggtgattttaaaattacaatattggggatg
ctgggaacatatggctttgagaggagaattctggatactgccaagtccttgatagaggat
gatacgttctataccatgagtttacttaagaagggggcatctcatgggtatgccccgcgg
agtcttgtatgttgtatatgtaactgtcctctcactaaggattcccctagtttccggatt
cgagttttcagttgtggtcatgctactcatcttcagtgtgaactgctcgaaagtgaaaca
tcaagtaaaggttccttgtctggatgccctatttgtatgcctaagacaaatactcagagg
cctagaaataaatcagtccttggtgagaatggtttggtgaataaggtttcatcaagagcg
aaacgagcacatggaactggcactttacattcacatgaagattcatcagacaattcatat
gggctgcagcaaatgtcacggtttgagatattgactaatcttcagaaagaccagagatta
gtccagatagaaaatatgccccagttgagacttgccccaccagctgtttatcatgaaagg
gtaaagaaaggacctgaggttttgacaggagagagtagcagtgctattgcgaaaagaatt
gaaaaatcgagcaaaaggaggcaactcagggagcttaaagtgacaggatcatctcttcgg
ttcccattaaaatcaagtatatttggcaaagagaagataaataaacggtga
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integrated database retrieval system
