Ricinus communis (castor bean): 8286121
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Entry
8286121 CDS
T01087
Name
(RefSeq) protein CHROMATIN REMODELING 5 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
rcu
Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcu03021
]
8286121
03036 Chromosome and associated proteins [BR:
rcu03036
]
8286121
Transcription machinery [BR:
rcu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
8286121
Chromosome and associated proteins [BR:
rcu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
8286121
SLIK complex
8286121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HTH_CHD1_Hrp3
CHD1-like_C
Chromo
HDA2-3
ResIII
DEAD
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
8286121
NCBI-ProteinID:
XP_048228057
LinkDB
All DBs
Position
1:32999763..33019981
Genome browser
AA seq
1754 aa
AA seq
DB search
MAFFRNYSNQTVSHSVLEDKGQGHRIGRMVGSEDIEVIASEREFDMNVDAQYESEGEDAG
RTEGDAAPDNGGVSVSNSYLQPPGRRNEAGKWGSSFWKDCQPLGAQGASDSAHDSKSDYK
IAEGSEDNMSDGRDGTLESEDEEGQKDLNKGQKGQSDVPADEMLSDEYYEQDGEDQSDSI
HYRGFGHSAGLNSRLHLKPAPVKNNFSRSSRAIPNPEDEDGENNDDGDADYEEEEEEDED
DPDDADFDPDFGAASSHGRQKDKEWDGEDSEEENDMDDDDVDVSDEDDAYYIKKPKSRPQ
GKGGRNAKSAVERKSIPASSRQKRGKPSLEEDEYSGEDSDGDSDENFKTMTRRGSHIRKS
NARSTISTNISGRNSEVRTSTRSVRKVSYVESEESEEIDEVKKKKSQKEEIEEEDGDSIE
RVLWHQPKGMAEDALRNNQSTEPVLLSHLFDSEPDWYEMEFLIKWKGQSHLHCQWKSFTE
LQNLSGFKKVLNYTKKVNEDIKYRRMLTREEIEVNDVSKEMDLDLIKQNSQVERVVADRI
IKDSSGNVVPEYLVKWQGLSYAEATWEKDLDIEFAQDAIDEFKARDAAIAVQGKMVDLQR
KKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSM
LGFLQNAQQIPGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYND
KKVGRPIKFNALLTTYEVVLKDKAVLSKIRWNYLMVDEAHRLKNSEAQLYTTLSEFSTKN
KLLITGTPLQNSVEELWALLHFLDSDKFKSKDDFVQNYKNLSSFNEIELANLHMELRPHI
LRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVE
LKKCCNHPFLFESADHGYGGDSGFNDSSKLERIILSSGKLVILDKLLVRLHETKHRVLIF
SQMVRLLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLG
INLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKM
VLDHLVIQKLNAEGRLEKKEAKKGSYFDKNELSAILRFGAEELFKEDKNEEESKKRLLSM
DIDEILERAEKVEEEEPVGEEGKELLSAFKVANFCSTEDDGSFWSRWIKPEAISQAEDAL
APRSARNNKSYAEANHFEGSNKRKKKSSEVLEPQERVLKRRKSDYTAPSVPMIEGASAQV
REWSQGNLSKRDALRFSRAVMKFGNANQIDLIVAEVGGSLVVAPPDAQIELFDALVDGCK
EAVDAESLDPKGPLLDFFGVPVKANDLLNRVQELQLLAKRINRYENPIAQFRVLTYLKPS
NWSKGCGWNQIDDARLLLGIHYHGFGNWEKIRLDEKLGLSKKIAPVELQHHETFLPRAPN
LRDRANALLEMELAHAGGKSTNAKVGRKATKKQKENALNISVSRGRVKKGKTGSATVAVQ
MSKNRPQKPQKAEQLVKEEGEMSDNEELCEQFKEVKWMEWCEDVMVAEIKTLRRLQKLQT
TSADLPKEKVLSKIRNYLQLIGRRIDQIVLDYERELYRQDRTTMRLWNYVSTFSNLSGER
LHQIYSKLKQEQEEAGVGPSHINGSASGGDSSYFPLSRHVQRGYKNMNAYQMSDPIQKGH
DNGKFEAWKRRKRAEADMQSQVQPPLQRPMSNGARVTDPNSLGILGAAPSDNSRFFRMHQ
TGFPPKQNFPSGIK
NT seq
5265 nt
NT seq
+upstream
nt +downstream
nt
atggcatttttcaggaactattcaaaccaaacagtatcacacagcgtactggaagataaa
ggtcagggacaccgaattggtagaatggtgggtagtgaagatatagaagtgattgccagt
gaaagagaatttgacatgaatgttgatgcacaatatgaaagcgaaggggaagatgctggc
aggacggaaggtgatgctgctcctgacaatggaggagtaagtgtcagcaattcatatttg
cagcctcctggaaggagaaatgaggctggaaaatggggttcaagtttttggaaggactgc
caacccttgggtgcgcaaggagcctctgattctgcacatgattcaaaatcagattataaa
attgcagaaggttcagaagataacatgtcagatggaagggatggtacattagaatcagaa
gacgaggagggacaaaaagaccttaataagggccaaaaagggcagtcagatgtccctgca
gatgaaatgttgtccgatgaatactatgagcaggatggggaagatcaaagtgactctatc
cattatagaggatttggccattctgctggattgaattctagattacatttgaaacctgca
cctgttaaaaataatttctctaggagttcaagagccatacctaaccctgaagatgaggat
ggcgagaataatgatgatggtgatgctgattatgaagaagaggaagaggaagatgaagat
gatcctgatgatgcagattttgatcctgattttggtgccgcaagcagccatggaaggcaa
aaggataaagagtgggatggtgaagattcagaggaagagaatgacatggatgatgatgat
gtagatgtctcagatgaagatgatgcttattacataaaaaagcccaagagtaggccacaa
ggtaaaggtgggcgtaatgcaaaatctgccgtagaaagaaagtcaatacctgcttctagt
cgacaaaagagaggaaagccatcactcgaagaggatgagtattcaggagaggactctgat
ggtgatagtgatgagaattttaagaccatgacaaggcgaggatcacatatccgcaaatcg
aatgcgcgctcaactatatcaaccaatatcagtgggaggaacagtgaggtccgcacctct
actaggtcggttcgaaaggtatcatatgttgaaagtgaagagagtgaagaaattgatgaa
gtgaaaaagaaaaagtcccagaaggaagaaattgaagaagaagatggcgattctattgaa
agagtgctgtggcatcagccaaaaggcatggcagaagatgctctgaggaacaatcaatca
acagagcctgtgttgttgagtcacttgtttgattctgaaccagattggtatgaaatggag
tttttaataaaatggaaaggccagtcacatttgcactgtcagtggaaatcttttacagaa
ctacaaaatctgagcggctttaagaaggtattaaactacacaaaaaaagtgaatgaagat
ataaagtatcgcagaatgcttacacgtgaggagattgaggtcaatgatgtgagtaaggaa
atggatttggatctaatcaagcaaaatagtcaggtggagagagttgttgctgatagaatc
attaaagatagctcaggaaatgttgtgccagaatatttagtcaagtggcaaggattatct
tatgctgaagcaacctgggaaaaggatttagatatagaatttgcacaagatgcaattgat
gagttcaaggcacgcgacgctgcaatagctgtacaaggaaaaatggtggatctccaacgc
aagaaaagcaaagcgagtttaaggaagcttgatgaacagccggagtggctaaaaggagga
aagcttcgtgattatcagctggagggtttgaattttctcgttaatagttggagaaatgat
acgaatgtcattttagctgatgagatgggtcttggaaaaacagttcagtcagtttctatg
cttggctttttacagaacgcacagcaaatcccaggaccgtttcttgttgttgtaccatta
tccactttgtctaactgggctaaagaatttagaaaatggcttcctgatatgaatattatt
gtatatgttggtacccgtgctagccgagaggtttgccagcaatatgaattctataatgat
aagaaagttgggcggccgattaaatttaatgcactattgactacgtatgaggttgttctg
aaggataaagcggtgctgtctaagatcaggtggaattatctaatggttgacgaggctcat
aggttaaaaaatagtgaggcacagttgtatacgactctctcggaatttagcaccaagaac
aagttattaattactggaactccattacagaacagtgtggaagaactatgggctttgctc
cacttccttgattctgataagttcaagagcaaggatgactttgtgcaaaattacaagaac
cttagctcattcaatgaaattgagctggccaatctgcatatggaattgaggcctcacatt
ctccgaagagttatcaaggatgtagagaaatccttgcctccaaagattgagcgtattttg
agggttgagatgtccccactccagaaacagtactataaatggattttggaacgaaatttt
catgaccttaacaaaggtgttcgtggaaatcaggtttcacttctaaatattgtggtagag
ttgaagaagtgttgtaatcaccccttcctatttgaaagtgctgaccatggttatggtggg
gattctggtttcaatgatagcagcaagttggagagaattatcttgagcagtggaaagctg
gttattcttgacaagttacttgttaggttgcatgagacaaaacaccgtgttttgatattt
tcccagatggtcagactgttggatatactggcagaatacttgtctcttaggggtttccag
tttcaaaggcttgatggtagtacaaaggctgagttgcgtcagcaggctatggatcatttc
aatgcacctggtagtgatgatttttgcttccttctttcaactcgagctggtggccttggt
atcaatcttgctacagccgatacagttataatatttgattcagattggaatccccagaat
gacttacaggcaatgagtagagctcataggattgggcaacaagaagttgttaatatatat
aggtttgtcactagcaaaagtgttgaggaagatatcctagagcgagctaagaaaaagatg
gttcttgaccatttggtgatccaaaaattgaatgcagagggcagacttgagaagaaagaa
gcaaaaaaagggagttattttgacaaaaatgaactttctgcaattttaaggttcggagca
gaggagctatttaaagaggacaaaaatgaagaagaaagcaagaagagactattaagtatg
gatattgatgaaattcttgaaagagcagaaaaagttgaagaggaggaacctgtaggagag
gaagggaaggaattgttgagtgcttttaaggttgccaatttctgtagcactgaagacgat
gggagtttttggagtcgttggataaaaccagaagctataagccaagctgaagatgcatta
gctccacgttctgcaagaaacaacaagagttatgctgaggctaaccattttgagggaagt
aacaaaaggaaaaagaaaagttctgaggttctggagccacaggagcgagtgctgaagcgt
cgcaaatctgattatactgctccttcagtcccaatgattgaaggcgcatctgcccaagtg
agagaatggtctcaagggaatctctctaagagagatgccttgcgtttttctcgtgcggta
atgaaatttggaaatgcaaaccaaatagacttaatagttgcagaggttggcgggtcactt
gtagtggctccgcctgatgcacagattgagctttttgatgctttggttgatggttgcaag
gaagcagttgatgcagagagtctggacccaaagggtcctttgttggacttttttggtgtc
cccgtgaaggctaatgatctactaaaccgcgttcaagaacttcagctactggcaaaacga
attaatcgttatgaaaacccaattgcacaatttcgagtattaacataccttaaaccttcg
aactggtccaagggctgcggttggaatcagattgatgatgcaagattgcttttgggaata
cactatcatggatttgggaattgggaaaagataaggttagatgaaaagcttggcctttct
aaaaagattgctccagtggaactacaacaccatgagactttcctaccacgggctccaaat
ttgagggaccgtgctaatgcactcctggaaatggaacttgcacatgctggtgggaagagt
acaaatgctaaagtgggtcgtaaggccaccaagaagcagaaggaaaatgctctcaacatc
tcagtatctcgtggtagggtcaagaaaggaaaaactggttctgcaacggtcgctgttcaa
atgagcaagaatcgacctcagaaacctcagaaagctgagcagctggtgaaagaggagggt
gaaatgtcagacaatgaagaattgtgtgagcagtttaaggaagtcaaatggatggaatgg
tgtgaagatgtcatggttgctgaaattaaaacccttagacgtcttcagaagctgcagact
accagcgccgaccttcctaaggaaaaggtgctttcaaaaattcggaactatttgcagctt
attggacggaggatagaccaaattgtcttagattatgaaagagaactttatagacaagat
aggactactatgcgattatggaactatgtgtccaccttttcaaatctatctggggagagg
cttcaccagatatattccaaactcaagcaggagcaggaggaggcaggggttgggccctcc
cacatcaatggctccgcttctggtggtgattccagttattttcctctttcacgccatgtt
caaagagggtataaaaatatgaatgcctatcaaatgtcagacccaattcagaaaggtcat
gataatgggaaatttgaagcatggaaacgacggaaaagagctgaagcagatatgcaatct
caagttcagcctcccttgcaaagaccaatgagtaatggtgctcgtgtaactgatcctaat
tcattaggtattcttggggctgcaccatctgataatagtcgttttttccggatgcatcaa
actggttttcctccgaaacagaatttcccgtcaggtataaagtag
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integrated database retrieval system
