Ricinus communis (castor bean): 8286306
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Entry
8286306 CDS
T01087
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8286306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8286306
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
8286306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF6799
Motif
Other DBs
NCBI-GeneID:
8286306
NCBI-ProteinID:
XP_002532079
UniProt:
B9T1F1
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All DBs
Position
10:19593894..19598438
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AA seq
303 aa
AA seq
DB search
MGLPNVSGDLSTEMEADAFRRLFPLLFHERHLAESIRPDGRSLGRARDTTLALGAVVSAD
GSAIAKIGSTTMMAAIKMEVMTPSSESPDEGCIAIDFHMPPICSPLVRPGRPAEAAPVVS
KQLSDTIMSSAMIDLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALFSAVAAFTNLQIP
IVSLNDDGKVVVVSDENEGGKREKEAVNKEKRKLTLRSLPFSLTCVLHKNYILADPTAEE
ESIMETLVTVVLDSSARLVSFYKPGGPVLAYTSAVQDCVALTRQRVKELQNILDEALSGM
QID
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgccaaatgttagtggggacttgtcgacagaaatggaggctgatgcttttaga
cgtcttttccctcttctttttcatgagcgtcatcttgctgaatctattcgccctgatggt
agatcacttggtagagctagagatacaacacttgctctaggtgctgttgtatctgctgat
gggtctgcaatagcaaagattggctcaactaccatgatggctgccataaaaatggaagtc
atgacgccgtcttcagagtcaccagatgagggctgcatagctattgatttccacatgcct
ccaatttgttctccacttgttaggcctggtaggcccgctgaagcagcaccagttgtgtca
aagcaattatctgatacaataatgagttcagcaatgattgatttaaaggaactatccctg
gttagtggaaaagctgcatggatggcatacttggatatttattgtttggatgctgatggt
tccctttttgatgctgctttgttctcagcagttgctgctttcaccaatttgcaaattccc
atagtttctctaaatgatgacggaaaggtagtagttgtatctgatgaaaatgagggggga
aagcgggaaaaggaggcagtcaacaaggagaagaggaagctcactctacggagcctgcca
ttctcgttaacatgtgtacttcacaagaactacatcttggcagaccccactgcagaggaa
gagtctatcatggaaactcttgtaacagtggttttggattcatctgctagacttgtgtcc
ttttacaagccagggggaccagttcttgcctatacttcagctgttcaggattgtgttgct
ttaacaaggcaaagagtgaaagaacttcaaaatatcttagatgaagccctttctggcatg
cagattgactaa
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