KEGG   Ricinus communis (castor bean): 8286371
Entry
8286371           CDS       T01087                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    8286371
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rcu03041]
    8286371
Spliceosome [BR:rcu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    8286371
 Complex C
   U5 SnRNP specific factors
    8286371
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WDR55 EIF3I Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_WDHD1_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_SPT8 NBCH_WD40 ANAPC4_WD40 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_HPS5 eIF2A Beta-prop_NWD2_C Beta-prop_DCAF12 Beta-prop_WDR75_2nd Beta-prop_RIG_1st Beta-prop_Nup120_160 Nbas_N
Other DBs
NCBI-GeneID: 8286371
NCBI-ProteinID: XP_002524865
UniProt: B9SFU6
LinkDB
Position
1:complement(11703185..11705383)
AA seq 345 aa
MQVAPREGDNALSVPGSRPMEWSTVPYTGLQGPGPSGKQRTSSLESTIMLLTGHQSAVYT
MKFNPAGNLIASGSHDKDIFLWYVHGECKNFMVLKGHKNAVLDLHWTTDGSQIISASPDK
TVRAWDIETGKQIKKMAEHSSFVNSCCPTRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP
DKYQITAVSFSDASDKIFTGGIDNEVKVWDLRKGEVTMKLEGHQDMITGMQLSPDGSYLL
TNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCNWSPDGTKVTAGSSDRMVYI
WDTTSRRILYKLPGHTGSVNECVFHPHEPIIGSCSSDKQIYLGEI
NT seq 1038 nt   +upstreamnt  +downstreamnt
atgcaagttgctcctagagagggtgataatgctctgtctgtccctggttcaaggccaatg
gaatggtctactgttccatatactgggctacaagggcctgggccaagtggaaagcaacgg
acatcaagtttggaatcgactatcatgttactcacaggtcatcagagtgccgtatataca
atgaaatttaatccagctggaaatctcattgcttctggatcacatgacaaggatatcttt
ctatggtatgtccatggtgagtgcaaaaatttcatggtcttgaaagggcacaaaaatgca
gttctggatcttcactggactactgatggatcccagataatatcagccagtcctgacaaa
actgtcagggcatgggatattgaaaccgggaaacagataaagaaaatggcagaacactcg
tcttttgtgaattcatgttgtcctactcggagggggcctccacttgttgttagtggatct
gatgatggaaccgcaaaactttgggatatgcggcagaggggagcaatccaaacttttcca
gataaataccaaatcacagctgttagtttctctgatgcgtcagataagattttcacaggt
ggtatagacaatgaagtaaaggtatgggatctgcgcaaaggtgaagtaaccatgaaactt
gaaggtcatcaagatatgatcacaggtatgcagttgagtcctgatggctcatatcttctt
actaatggtatggactgcaagctttgcatttgggacatgcgtccttatgcaccacaaaat
cgctgtgttaagatactggaaggtcaccaacacaactttgaaaagaacttgttgaaatgt
aactggtcacctgatggaaccaaggttacagctggtagttctgatcgaatggtttatata
tgggacacaacttctcggcgcatactgtataagcttcctggccacactggatcagtcaac
gagtgtgtcttccaccctcatgagcctataattggatcttgcagtagtgataaacagatt
tatcttggggagatttga

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