Ricinus communis (castor bean): 8286743
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Entry
8286743 CDS
T01087
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
8286743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcu03400
]
8286743
DNA repair and recombination proteins [BR:
rcu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
8286743
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
DUF7006
Motif
Other DBs
NCBI-GeneID:
8286743
NCBI-ProteinID:
XP_002511977
UniProt:
B9RE38
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Position
1:complement(2768937..2777386)
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AA seq
936 aa
AA seq
DB search
MDEDNKLPELKLDAKQAQGFLSFFKTLPHDPRAVRVFDRRDYYTSHGENATFIAKTYYHT
TTALRQLGSGPDGLSSVSISKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGN
LGSFEDVLFANNEMQDSPAVAAVIPNFRENGCSIGLGYVDLTKRILGLAEFLDDSHFTNL
ESALVALGCKECLLPIESGKSIECRTLHDALTRCGVMLTERKKNEFKTRDLVEDLGRLVK
GSIEPVRDLVSGFEFAPGALGALLSYAELLADESNYGNYTIRKYNLDSYMRLDSAAMRAL
NVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINSRLDLVQAFVEDT
ALRQDLRQHLKRISDIERLVHNLEKRRAGLQHIVKLYQSSIRLPYIRGALDKYDGQFSSL
IKERYLDPLESLTDDDHLNKFIALVETSVDLDQLDNGEYLISPSYDPALSALKDEQESLE
CQIHNLHKQTAQDLDLPQDKGLKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKD
GVKFTNTKLKKLGDQYQKIVEEYKNCQKELVNRVVQTAATFSEVFKSLAGLLSQLDVLLS
FADLATSCPTPYTRPDITPSDVGNIILEGSRHPCVEAQDWVNFIPNDCKLIRGESWFQII
TGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQ
EMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVIKAPTLFATHFHEL
TGLADEKAEPHMKQIAGVANYHVSAHIDSSNRKLTMLYKVEPGACDQSFGIHVAEFANFP
ESVVALAREKAAELEDFSPNAIVSNDTTEKVGSKRNRKCDPDDVSRGAARAHKFLKEFSD
LPLETMDLKEALQQVSKLKEGLEKDAANCQWLKQFF
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagataacaagctacctgagctcaagctagatgctaaacaggctcaggggttt
ctctccttcttcaaaactctacctcatgacccaagagcagtgcgggtattcgataggcgg
gactattacacatcacatggtgaaaatgcaaccttcattgcaaagacatattaccatacg
actactgctttacgacaattgggcagtggacctgatggcctttccagtgtgagtattagt
aagaatatgtttgaaacaattgccagagatcttttactggagagaacagatcatacactt
gagctctatgagggcagtggatcaaattggagattggtgaaaagtggaactcctggaaat
ctaggcagttttgaagatgttttgtttgccaacaatgaaatgcaggattcccctgcggtt
gctgcagtcatcccgaactttcgtgaaaatgggtgcagtattgggctaggttatgttgat
ttaacaaagagaattcttggattggccgaatttcttgatgatagtcactttacaaatttg
gagtcagccttggttgcccttggttgtaaggaatgccttttgcccattgagagtggtaaa
tccattgaatgtagaactttgcatgatgcactgactagatgcggtgtgatgttaactgag
agaaagaaaaatgagttcaaaacaagggatttggtggaggatctcggtaggcttgtaaaa
ggttccattgaaccagttagagatttagtttctggttttgaatttgcacctggtgcttta
ggagcattactctcttatgcagaattactggcggatgagagcaattatggaaattataca
atcagaaagtacaatcttgacagctacatgagactggattctgctgccatgagggctctt
aatgtccttgagagcaaaactgatgcaaacaaaaattttagtttatttggtcttatgaat
agaacgtgcactgctgggatgggaaaaagattgcttcacatgtggctaaaacaaccttta
ctagatgtaaatgaaatcaactccagactggacttggtacaagcttttgtggaggatact
gcacttcgccaagatctgaggcagcatttgaaaagaatttcggacattgagcgcctagta
cacaatcttgagaaaagaagagctggtttgcagcatattgtgaaactttatcagtcaagt
ataagactgccatacattaggggtgctctggacaagtatgatggtcaattttcatccttg
atcaaggaaaggtatttggatcctctcgagtcattgaccgatgatgatcacttgaacaag
tttattgctcttgtagaaacttctgttgaccttgatcaacttgacaatggggagtatttg
atttcaccaagttatgacccagcactatctgcgctgaaagatgaacaggagtcattggag
tgccaaatacacaatttgcataaacaaactgctcaggatcttgatcttcctcaagataaa
ggattaaagttagataagggaacccaatttggacatgtctttagaattacgaagaaagag
gagccaaaaataaggaaaaagctgaccacccaatttattgtcctcgaaacccgaaaagat
ggagtgaaattcacaaacacaaaacttaagaagttaggggaccagtaccaaaagatagta
gaggaatacaagaattgtcaaaaagagctggtcaatcgagttgttcaaactgcggcaact
ttctctgaggtgtttaaatctttggctggcttgctgtctcaattggatgtcttactcagt
tttgctgatttggctactagttgtccaaccccctacacaagacctgacataactccatct
gatgttggaaatattatattggaaggaagtagacatccttgtgtggaagcccaagactgg
gtgaattttataccaaatgattgtaaacttatcaggggagaaagttggttccaaataatt
acagggcctaatatgggtggaaaatctacatttattcggcaagttggtgtgaatatttta
atggcacaagttggttcctttgttccttgcgacaaggctagcatttcggttcgtgattgc
atttttgctcgtgttggtgctggggattgccaactacgtggagtttctacctttatgcaa
gaaatgcttgaaactgcttcaatcctgaaaggagctacagataagtcattgataataatt
gatgaattaggccgagggacatcaacttatgatggttttggtttagcatgggccatatgc
gaacaccttgttcaagtgattaaagcacctaccttatttgcaacccactttcatgaactg
actggtttagctgatgaaaaagctgagccccatatgaagcaaattgctggtgtagcaaac
tatcatgtcagtgcacacattgactcatcaaatcgcaagctgactatgttatacaaggtt
gaaccgggggcttgcgatcaaagttttggtatacacgttgcagaattcgcaaactttcct
gaaagtgttgttgcccttgctcgagaaaaggcagctgagttggaagatttctcacctaat
gctattgtttcaaatgatactacagaaaaggttgggtccaaacgaaatagaaaatgtgat
cctgatgatgtgtctagaggtgcagctcgggctcacaaatttctgaaggagttctctgat
ttgccactagagactatggatttgaaggaggctctccagcaagtaagcaagctgaaagag
ggcttagagaaggatgcagcaaattgccagtggcttaagcaattcttctag
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