Ricinus communis (castor bean): 8286836
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Entry
8286836 CDS
T01087
Name
(RefSeq) uncharacterized PE-PGRS family protein PE_PGRS54
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03015
mRNA surveillance pathway
rcu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8286836
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
8286836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8286836
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
8286836
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
8286836
NCBI-ProteinID:
XP_002522751
UniProt:
B9S9T2
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Position
9:complement(6509954..6513669)
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AA seq
702 aa
AA seq
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MEGGEGEDQMEHFQRNEAISAVADEGFLGEEEDDDYEDLYNDVNVGEGFLQSLRKNDDLG
LQNQENTNNNNNVTNYEKKIESPAVVAQNLGATAGETSVSRVSSGYDMVQKVGPTSGCGG
GGGGLRVELGQSSSKVSEIEEQTGNINIKSNNSNHSNSNVNNNNNSSVSVVQGNVISQQS
QVVSTGNAVNESNMVRNVNVNGGSYNNMVGNGSSSGGGGSGTILFVGELHWWTTDAELEA
ELCKYGVVKEVKFFDEKASGKSKGYCQVEFFDPAAAAACKEGMNGHLFNGRPCVVAFATP
YSVKRMGEAQANRNQQMAQASLSQARRGNNDAGKNAAAGAAAGGATGSAIATGGNYQGGD
GNRGYGRGNWGRGNGQGMGGRGPVGPMRNRAGGGMGGRGIMGNAGNGFGQGLGATPPLLH
PNSMMGQGFDPAFGAPMGRMGSYGGFPGAPTPPFSGILSSFPPVGGVGLPGVAPHVNPAF
FGRGMPMNGMGMMPTTGVDGPNMGMWSDPSMGGWGVEDHGGGRAGESSYGEEAASDHQYG
EVSHDRGGWQNTMKEKDRASERDWSGSSDRRYRDDREAGYDRDMPREKDMGGHDHDWPER
RHREDRDVGRERDRERERDRERSRDRERERERDRDRDRDHDRYREDRDRYADNHRYRDRE
VEHDDDWDRGRSSRTHTKSRLSQERSRSRDADYGKRRRLTSE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggaaggaggagaaggagaggatcagatggagcactttcaacgtaacgaagcaatctca
gccgttgctgatgaggggtttttaggcgaagaagaagatgatgattacgaggatctttac
aacgatgtcaatgtcggtgagggtttcttgcaatctcttagaaaaaacgatgatttaggg
ttacaaaatcaagaaaataccaacaataataataatgttactaattatgagaaaaagatt
gaatcacctgctgttgttgcacagaacctcggtgctactgcaggagaaactagtgtttct
agggtttcttctggttatgatatggtgcagaaagtgggtcccaccagtgggtgtggtggt
ggtggtggggggctcagggttgaattagggcaaagttctagtaaagttagcgagattgag
gagcagactggtaatattaatatcaaaagtaataatagtaatcatagtaatagtaatgtt
aacaataacaacaacagcagtgtaagtgttgttcaagggaatgttattagccagcaatct
caagttgttagtacgggaaatgcagtgaatgagagtaatatggtaaggaatgtcaatgtc
aatggaggaagttataacaatatggttggtaacggtagcagcagcggtggaggtgggagc
gggactatattgtttgtgggggaattgcattggtggacaacggatgcagagctagaagct
gagctgtgtaagtatggtgttgttaaggaggttaagttttttgatgagaaggcgagtgga
aagtcaaaagggtactgtcaagttgagttttttgaccctgcagctgctgctgcttgtaaa
gaagggatgaatggacatttattcaatggaaggccgtgtgttgtggctttcgcaactcct
tatagtgtgaagaggatgggtgaggctcaagctaatagaaatcagcagatggctcaggct
tcgctttcacaggcaagaagggggaataacgacgctggaaagaatgctgctgcaggtgct
gctgctggtggtgccactgggagtgctattgcaactggtgggaattatcaaggtggggat
ggaaatagaggatatgggagaggtaattggggtagagggaatgggcaagggatgggcggt
agagggccggttggtccaatgaggaatagggctggtggtgggatgggtgggagaggtatc
atggggaatgctggaaatgggtttggccaaggccttggtgctaccccgcctttgttgcac
cccaattcaatgatggggcagggttttgatccggcatttggtgcacctatggggagaatg
gggagttatgggggctttcctggggcccctacacccccattttcagggatattatcttcc
tttccacctgttggtggcgtgggattgcctggagtagctcctcatgtgaatcctgcattt
tttggaagaggaatgccaatgaatggaatgggaatgatgccgactactggtgttgatggg
ccgaatatgggaatgtggtcggatcctagtatgggtggatggggagttgaagatcacggt
ggtgggagagctggcgagtctagttatggtgaggaagctgcatctgatcatcaatatggt
gaggttagtcacgatagaggaggttggcagaacacaatgaaggagaaagatagagcttca
gagagagactggtccggatcttctgatagaaggtatcgtgatgatagggaagctggatat
gacagagatatgcctagagaaaaagatatgggtggtcacgatcatgactggccagagaga
aggcaccgcgaagacagagatgttggtagagaaagggatagggagcgtgagagggatagg
gaacgctctcgagatcgtgagcgagaacgagaaagggatcgtgatagggaccgagatcat
gatcgttacagggaagaccgtgatagatatgctgataatcataggtatagggaccgtgaa
gtagagcatgatgatgattgggacaggggtaggtcatcaaggactcacactaaatcaaga
ttatcacaggagcgttcaagatctagggatgctgattatgggaagagacgacggcttaca
tctgagtaa
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