Ricinus communis (castor bean): 8286892
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Entry
8286892 CDS
T01087
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03440
Homologous recombination
rcu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
8286892
03450 Non-homologous end-joining
8286892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rcu03032
]
8286892
03400 DNA repair and recombination proteins [BR:
rcu03400
]
8286892
DNA replication proteins [BR:
rcu03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
8286892
DNA repair and recombination proteins [BR:
rcu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
8286892
BRCA1-C complex
8286892
NHEJ (non-homologous end-joining)
MRX complex
8286892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
AAA_21
Rad50_zn_hook
SbcC_Walker_B
SMC_N
AAA_29
CRISPR_Cse2
ABC_tran
AAA_16
AAA_13
AAA_27
AAA_22
Cas_Csa5
Motif
Other DBs
NCBI-GeneID:
8286892
NCBI-ProteinID:
XP_002522807
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All DBs
Position
9:6119703..6136397
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKHVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDSAYKLRESITQDEERTESSKV
QIQALENKVQNVDVKIHQIQTTLKDLRNLQEKIMTKTVERRTLFKEQQRQYEALEEENED
PDEDMMEWKTKFDEKVAQMESSISKLKREKNDTEIKTSFLKENITEYIREISRLQTEAEA
HNSLKNERDSTIQKLCARHNLGSLPQAPLSDDIALNLTNRLKSRLTDLRKDLQDKKTSND
TEVKTAEDCYLDVNDRWKHIDAQKQAKREIKNGILDRITKKEHDRASFEEEISHVNLSHI
DEREKNMRIEVERKTNQLAERAFESNIRQKQTELYGIEQEIKALDGEKDILAIYSEDRVK
LSLKKADLENHKKKHKKIIDEHKDRIRGVLKGRVPSDKDMKKEITQALRALAVEFDDLNS
KSHEAEKEVNVLQMKIQEVNNNLSKLRKDMDSRKRFIESKLHSLDQQSLTVDCYLKVLGS
AKDKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAAS
SAEHMKVLAAESSNADSNFQQLDKLRMLYEEFVKIEKETIPLAEKNLHDLTEELDQKSQA
LDDVLGVLAQIKADKDSVEALVQPVETADRLYQEIQTWQKQVDDLEYKLDIQRQGGRSME
EIHSELSSLQDTKEALHNELEKLRDERRYMENDLSHIQQKWHALREEKIKADNTLRNVKK
AEEELEHLIEEKNQVELDEKHLAEALVPLSKEREKLRSYNSELKVKLEQELEEQKKELDS
YQWDVDTLLKINSKIKEYNDLKKRERLKEMQEKLSLLESQLQSCDDRKKEILDELNKCEN
ANQNQESLYRKIQDNLNYRKTKAEVDKLTQEIESLEEEMLKIGGVSTFEGELARHLQERE
SLLSELNKCRGTMSVYQSNISKNKVDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVVMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALL
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDDHQHSIIESQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggtcgataagatgctgattaaaggaattcggagcttcgacccggaaaacaaa
cacgtcatcaccttcttcaagcctttgaccttaatcgtcggccccaatggcgctggcaaa
accacgattatagaatgcttgaagctttcttgcaccggagagttgcctcctaatgcaagg
tctggccacagttttattcatgatcctaaggttgcaggagaaacagagacaaaaggacaa
attaagctacgattcaagactgcagcaggaaaggatgtggtgtgcattaggtcatttcag
ctaacacaaaaggcgtcgaaaatggaatataaagcaattgaaagtgtgcttcaaacaatt
aatccacatacaggagagaaagtttgccttagctatagatgtgctgacatggaccgagaa
attcctgctttaatgggggtctctaaggccattctagagaatgtgatatttgttcaccaa
gatgaagctaattggccactgcaagatccttccacattgaagaagaagtttgacgatatc
ttctctgccactagatatacaaaggccttggaggtcattaaaaaacttcacaaggatcag
gcccaagagataaagacatataaactaaaattggagaatcttcagactttgaaggactct
gcatataagcttcgagaaagcattactcaagatgaagaaagaacagaatcttcaaaagtc
caaattcaagctttagaaaacaaagttcagaatgttgatgtgaaaattcatcaaattcaa
acaactctgaaagatttgagaaatctacaggagaagataatgacaaaaactgtggaaagg
agaactttgtttaaggagcagcagagacagtatgaagcccttgaggaggaaaatgaagac
cctgatgaagatatgatggaatggaaaaccaagttcgatgaaaaggttgctcagatggaa
tctagcattagcaagctgaagagggaaaagaatgacacagagataaaaacttcttttctt
aaggagaatattactgagtatattcgagagattagcaggcttcagactgaagctgaagcc
cacaattccttgaagaatgaaagagattccaccatccaaaaactttgcgcaagacataat
ttagggtctcttccacaagcccctttaagtgatgatattgctttgaaccttacaaacaga
ctaaaatcaaggttgactgatctcaggaaggatttacaagataaaaagacatcaaatgat
actgaagtgaagacagcagaagactgttatttggatgtaaatgatcgttggaaacacatc
gatgctcagaagcaggctaaaagagagatcaagaatggcattttggatcgcattacaaaa
aaggaacatgatcgtgcctcatttgaagaagaaatttcgcatgttaatctttctcatatt
gatgaaagagaaaagaatatgcgaattgaagttgaaagaaagacaaaccaacttgctgaa
agagcatttgaatcaaacattcgtcaaaagcaaaccgagctttatggcatagagcaagaa
atcaaggcactcgatggggagaaggacatcttggctatatattctgaggacagagtgaaa
ctttccttgaagaaggcagacttggagaatcacaagaagaagcacaaaaaaataattgat
gaacacaaggatagaatcagaggagtgctgaaagggagggttccttctgataaggatatg
aagaaggaaattacccaagccttaagggctcttgcggtggaatttgatgacttaaactca
aagtcccatgaagctgagaaggaggtaaatgtgctgcagatgaaaatacaagaagttaat
aataacctgtccaagctgcgcaaggatatggattcaagaaagaggtttattgaatccaaa
ctccactcgctggatcaacaatctcttactgttgattgttacctcaaagttttgggctca
gctaaagataaaagagatgtccagaaaagcaagtacaatattgcagatggtatgcggcag
atgtttgatccctttgaaagagtagcccgtgctcatcacgtgtgcccttgctgtgagcgc
cctttctctgctgaagaagaagatgagtttgttaaaaagcaaagagtgaaggctgcaagt
tctgctgagcacatgaaagtgttggctgcggagtcgtccaatgcggattctaattttcag
cagctggacaagcttcgtatgctttatgaggaatttgtcaaaattgaaaaggaaacaatt
cctcttgcagagaaaaatctgcatgatcttactgaagagctggatcagaagtctcaagcc
cttgatgatgtcttgggtgttttagctcaaataaaagctgacaaggactcagttgaggcc
ttggtgcaacctgttgaaactgctgataggctttaccaagaaatccaaacttggcaaaag
caagttgatgatttggagtataagcttgacattcaaaggcaaggtggcagatcaatggaa
gaaattcattcagagctaagcagtttgcaggatacaaaagaagctttgcataatgaactg
gagaaactaagggatgaacggaggtatatggaaaatgatttgtcacacattcagcaaaaa
tggcatgccctgagggaggagaaaattaaggcggacaacactttacgtaatgtcaaaaag
gcagaagaagaattggaacatttgattgaggagaaaaaccaagttgagcttgatgaaaag
catttggcagaggctcttgtccctttatctaaggagagagaaaaattacggagttacaac
agtgaattgaaagtcaaacttgagcaggaacttgaggagcagaaaaaagaattagacagt
tatcagtgggatgttgacacactgcttaagattaattctaaaattaaggagtataatgat
ttaaagaagagggagagattgaaggagatgcaagaaaagctatcgctattggagtctcag
cttcaaagttgtgatgataggaagaaggagattttagatgaattaaacaaatgcgagaat
gctaaccagaaccaagagtcactatacagaaaaattcaagacaacttgaattacaggaaa
acaaaggctgaagtggataagctcacccaagagattgaatcactggaagaggaaatgctg
aagattggtggagtttctacattcgaaggcgaacttgcaagacacctgcaagaacgagaa
agtcttctttcagagctaaacaagtgtcgcggtacaatgtcagtttatcaaagcaatatt
tcaaagaataaagttgatcttaaacaggctcaatacaaggatattgacaagcggtacttt
gaccagctaattcagctaaagacaactgaaatggcaaacaaggacctggacagatattac
aatgcactcgacaaagcactcatgcgcttccacacaatgaagatggaggagataaataaa
atcattagggaattgtggcaacaaacatacagaggacaggatatagattacattagtatt
cattcagattctgaaggtgctgggactcgttcttacagctacaaggttgtaatgcaaact
ggagatgcagagttagaaatgagaggaaggtgtagtgctggtcagaaggtccttgcttcc
ctgatcattcggttggctttggctgagacgttttgcctcaactgtggaatactagcttta
gatgaacccacaacaaacttggatggcccaaatgcagagagtcttgctgcagctcttctt
agaattatggaggatagaaaggggcaagagaattttcaactgattgtaattactcatgat
gagcgatttgctcaactaattggtcagcgacagcacgcagaaagatactatcgagtagca
aaggatgatcaccagcatagcataatcgaatcccaagagattttcgattga
DBGET
integrated database retrieval system
