Ricinus communis (castor bean): 8287671
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Entry
8287671 CDS
T01087
Name
(RefSeq) ABC transporter A family member 1 isoform X1
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
8287671
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rcu02000
]
8287671
Transporters [BR:
rcu02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
8287671
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
RsgA_GTPase
AAA_29
nSTAND3
Motif
Other DBs
NCBI-GeneID:
8287671
NCBI-ProteinID:
XP_048226164
LinkDB
All DBs
Position
10:19909639..19942178
Genome browser
AA seq
1884 aa
AA seq
DB search
MGKKTRRQLKAMLRKNWLLKIRHPFVTLAEILLPTIVMLLLIAVRTRVDTRIHPAQPYIR
EDMFVEVGKGISPNFQQVLEVLLAEGELLAFAPDTEETRMMIRFLSIKFPLLRQASRIYK
DELELETYICSDHYGACGGVKNCSNPKIKGAIIFHDQGPQLFDYSIRLNHTWAFSGFPDV
KTIMDVNGPYLNDLELGVSPIPTMQYSFSGFFTLQQLVDSFIIFSAQQSETKTSSEYIEL
PSSNSSRSSSSLNFTWKNFSPSTIRIVPFPTREYTDDEFQSIVKNVMGVLYLLGFLYPIS
RLISYSVFEKEQKIREGLYMMGLKDGVFHLSWFIAYAFQFALSSGIITACTMDNLFYYSD
KSVVFVYFFSFGLSAIMLSFFISTFFTRAKTAVAVGTLSFLGAFFPYYTVNDPAVPTILK
VIASLLSPTAFALGSINFADYERAHVGLRWSNMWLGSSGVNFLVCLLMMWLDTLLYCAAG
LYLDKVLPRENGVRYPWNFLFKNCFWRTKSTIKINDKSSAKDAYSGGMDVIEPAVEAISL
DMKQHELDNRCIQVRNLCKVYATKRGKCAAVNSLQLTLYENQILALLGHNGAGKSTTISM
LVGLLPPTSGDALVFGKNILTDMDEIRNGLGVCPQHDILFPELTVREHLEMFATLKGVEE
DALETAITVMVEEVGLADKMNTVVSSLSGGMKRKLSLGIALIGNSKVIILDEPTSGMDPY
SMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHQYGVGY
TLTLVKSAPTASVAADIVYRHIPSAICVSEVGTEVSFKLPLASSSAFENMFREIESCMRN
AVSNSQTNIMEEKNYIGIESYGISVTTLEEVFLRVAGCDCDETDGFKQSSNILSSDFMIP
TAHNHAPEKILDSKMLGNYRKIISVISAIVGRACGLMVATFLSLINFLGMQCCCCCCIIS
RSTFWQHTKALFIKRAISARRDRKTIVFQLLVPAVFLLFGLLLLKLKPHPDQQSITLTTS
HFNPLLSGGGGGGPIPFDLSLPVAEKVAEYIDGGWIQSFKENAYRFPDSDKALADAIKAA
GPTLGPVLLSMSEFLMSSFNESYQSRYGAVVMDSQNDDGSLGYTILHNGSCQHAAPTYIN
VMNAAILRLATGEKNMTIRTRNHPLPMTKSQHLQRHDLDAFSAAIIVSIAFSFIPASFAV
AIVKEREVKAKHQQLISGVSVLSYWASTFIWDFVSFLVPSSFGIVLFYIFGLDQFIGRDC
FLPTIFLFLEYGLAVASSTYCLTFLFSDHTMAQNVVLLVHFFTGLILMVISFIMGLIETT
TSANNVLKNFFRISPGFCFADGLASLALLRQGMKDKSSDAVFDWNVTGASIFYLGIESIG
YFLLTIAVELLPFHKFTQVTITQYWMNFRNFWRGSSSGYSEPLLKSPEAVALDFDEDIDV
QTERNRVVSGSVGNAILYLRNLQKVYPGGKSGKKIAVHSLTFSVQAGECFGFLGTNGAGK
TTTLSMLSGEESPTDGTAFIFGKDIGSNPKSVRQHIGYCPQFDALLEFLTVREHLELYAR
IKGVADYSITDVVMEKLVEFDLLKHADKPSFVLSGGNKRKLSVAIAMIGDPPIVILDEPS
TGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQH
LKTRFGNHLELEVKPAEVSPVELENLCQIIQGRLLNIPSYPRSLLNDLEICIGAVDFITS
ENASAAEIRLSKEMILMIGQWLGDEERVNTLFSSSSTSDGGSAEQLGEQLVRDGGIPLPI
FSEWWLAKEKFSAIDSFVLSSFPGATFQGCNGLSVKYQIPYRDGLSLADVFGHLERNRNQ
LGIAEYSISQATLETIFNHFAASL
NT seq
5655 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaagacacgcaggcagttgaaagctatgcttcgcaagaattggcttctcaaa
attcgtcacccttttgttactcttgctgagattttgcttcccacgattgtaatgttacta
ttaatagctgtacgaacgcgagttgatacacgaattcaccctgcccagccgtatatacgg
gaagatatgtttgtagaagtgggcaaaggaatttccccaaatttccaacaagttctggaa
gtattgttggcagagggagagcttttggcatttgcaccagatacagaagaaacaaggatg
atgatccgcttcctgtcgataaagtttcctttacttaggcaagcttctagaatctacaaa
gatgaactggagttggaaacctatatatgctcagatcactatggtgcttgcggtggagtc
aagaattgttcaaatcctaaaatcaaaggagctattatatttcatgatcaaggtcctcaa
ttattcgattacagcatacgtctcaatcacacttgggctttctcagggttccctgatgtt
aaaaccattatggatgtgaatggcccttatctaaatgacttggaattgggtgttagtcca
ataccaacaatgcaatacagcttcagtggattcttcactcttcagcagctggtagattca
ttcataattttttctgcccagcagagcgagactaagacttcaagtgaatatatagagctt
ccatcttccaattcatctaggagctcttcttcgctcaattttacatggaagaattttagc
ccttcaacaattagaattgttccctttcccacccgcgaatacacggatgatgagttccag
tctattgtcaagaatgtcatgggagtactgtacctattgggatttctctatccaatctct
cgtcttatcagctattctgtgttcgagaaggaacagaagataagagaaggtctctacatg
atgggattaaaagatggagtatttcatctctcttggtttattgcctatgcttttcagttt
gcactttcatctgggataattacagcttgcaccatggataaccttttctattatagcgat
aagtcggtggtttttgtgtattttttctcttttggactcagcgcaattatgctgtcattt
tttatctctacattcttcacacgagcaaaaacagctgttgcagttggaacactgtctttt
cttggggcattctttccctattatactgttaatgacccagctgtcccgacgatattgaag
gtcatagcttctttgctttcacctacggcttttgctctaggatcaattaactttgctgat
tatgagcgtgctcatgttggccttcgctggagcaacatgtggctagggtcatctggagtg
aattttttggtctgcctattgatgatgtggcttgacactctgttatattgtgctgctggt
ctataccttgacaaggtccttcccagggaaaatggagtgcgttacccttggaacttctta
ttcaagaattgcttctggagaacgaaaagcacaattaaaattaatgataagtcttcagct
aaagatgcatattctgggggaatggatgttattgaacctgctgttgaggcaataagcttg
gatatgaagcaacacgaacttgataatagatgcatccaagttaggaacctgtgtaaggtg
tatgctactaagagggggaaatgtgctgctgttaattcactacaactcaccttgtatgaa
aatcagattcttgctcttttaggacacaatggagcgggaaaaagcacaacaatttcaatg
cttgtcggtcttcttcctcctacttctggggatgctttggtgtttggaaagaatatactg
acagatatggatgagatacggaatggattgggtgtatgcccacagcatgatattcttttt
ccagaattgactgtgagagagcatttggaaatgtttgccacactcaaaggtgtggaggaa
gatgctttggagactgctataactgttatggttgaggaagtgggtttggctgataaaatg
aacactgtcgtgagctctctttctggtggtatgaagaggaaattgtctcttggaattgcc
ctgataggaaacagtaaggttataattcttgatgaaccgactagtggaatggatccatac
tcaatgcggttgacatggcaattaatcaaaaagataaagaagggcaggataatattacta
acaactcactcaatggatgaagctgatgaactaggagatcgaatagctatcatggctaat
ggttctcttaaatgctgcggaagctccctcttcctgaagcatcagtatggggttggttat
actcttactttagtaaagtcggcacctactgcctctgtggctgctgatatcgtttatcgt
catattccatctgcaatatgcgtgagtgaggttggaaccgaggtttcctttaagcttcct
ttggcatcctcatcggccttcgaaaacatgttcagggaaattgaaagttgcatgagaaat
gcagtttcaaactctcaaacaaatattatggaggaaaaaaattatatcggcattgaaagt
tatggcatctcggttacaactctcgaggaggtatttctgagagttgcaggatgtgactgt
gatgagactgatggtttcaagcagagtagcaatattctttcatcggactttatgattcct
acagctcacaatcatgcaccagaaaaaattttggattccaaaatgctaggaaattataga
aagattatcagtgtgatatctgccatagtgggtagagcctgtggtttaatggttgctaca
tttttaagtttaattaatttcttaggcatgcagtgctgctgctgctgttgtattatttca
aggtcaacattttggcaacatactaaggcgttatttataaagagggcaatttctgctcgg
agagaccggaaaacaattgttttccaacttttagttcctgccgtcttcttgctttttggt
cttcttcttctcaagcttaagccacatcctgatcagcaatctattaccttgacaacatca
cattttaatcctctattaagtggcggcggcggcggcggtccaattccttttgatctgtcc
ttgcctgttgcagaaaaggttgcagaatacattgatgggggttggattcaaagctttaaa
gagaatgcgtacagatttcctgattcagacaaggcattagctgatgccattaaagctgcc
ggaccaactttgggaccagttttactttcaatgagtgaatttttaatgtctagcttcaat
gaatcatatcaatcgaggtatggagcagttgtgatggatagtcagaatgatgatgggagt
ttgggatataccatactgcataatggttcttgtcagcatgctgctccaacatatatcaat
gtgatgaatgctgcaattcttaggcttgctactggtgaaaaaaatatgacaattcggaca
cgcaaccaccctctgccaatgacaaaaagccagcacttgcagcggcatgatttggatgct
ttctctgctgctattattgttagtattgccttttcatttattccagcttcatttgcggtc
gccattgtaaaggaacgtgaggtgaaggctaagcaccaacaattgattagtggggtttct
gtactttcgtattgggcttctacattcatttgggacttcgtcagcttcttagttccttca
tcttttggaatagttctcttttacatatttggtcttgatcagtttattggaagagattgt
ttcttgccaacaattttcttgtttttggagtatggattagcagttgcatcatcaacatat
tgtcttacattcttgttttctgatcacaccatggctcagaatgtggttctactggtccac
ttttttactggactgattcttatggttatctcattcatcatggggcttatagagacaaca
acaagtgctaataatgttctcaagaacttcttcagaatatcacctgggttttgctttgct
gacggacttgcttcactagctcttttacgacaagggatgaaagataagtctagtgatgca
gtatttgactggaatgttactggagcttccatattttatcttggcattgagagcattggt
tactttctcttgacaattgcggtggagctgttgccttttcacaagtttactcaggttaca
atcacacagtactggatgaattttagaaatttttggcgtggctcttcctctggctattca
gaacctcttttaaaatctcctgaagctgttgctcttgactttgacgaagatatagatgtc
caaacagaaagaaacagggtggtttcaggatctgttggtaatgccatcctctacttacgt
aatcttcagaaggtgtatcctggaggaaagagtggcaaaaagatagctgtccattcattg
actttctcagttcaagcaggagaatgttttggtttcttaggaacaaatggagctgggaag
accactacactttcaatgttatctggggaagaatctccaactgatggaactgctttcatt
tttggcaaagatataggttcgaatcccaagtctgttcgtcagcatattggatactgcccc
caatttgatgctctcttggaattcttgactgtcagagagcaccttgagctttatgcaaga
ataaaaggagttgcagattacagtatcactgatgttgtcatggaaaagttggttgagttt
gacttgttgaagcatgctgataaaccatcattcgtacttagtggagggaacaagcgcaaa
ttatctgttgcaattgcaatgattggagatcctccaattgtaattcttgatgagccatca
acgggtatggatccgattgccaaaagattcatgtgggaagtgatatcccgattgtcaact
agacaaggaaagacagcagtaattctcaccacccacagcatgaatgaagctcaggcactg
tgtactcgtattggaataatggttggcggcagattaagatgcattggaagtccccaacat
ctgaaaacacgatttggaaatcaccttgagctagaggttaaacctgctgaggttagtcct
gtagagttggaaaatctttgccaaattattcagggaaggcttctcaacattccttcatat
ccgagaagtctgcttaacgaccttgaaatttgcattggggctgttgactttataacatct
gaaaatgcatcagcggcggagatccgcttgtcaaaagagatgatactaatgattggacaa
tggcttggggatgaagaaagagtgaatacacttttttcttcttcatccacttcggatggg
ggttccgctgaacagttaggagaacagttggttcgagacggtgggataccactgccaata
ttttctgagtggtggctagccaaagaaaagttttcagctattgattcttttgtgctgtct
tcatttcctggtgccacatttcaagggtgcaatggtttgagtgttaaatatcagattcca
tatagagatggactatcacttgcagatgttttcgggcacctggagcgaaataggaatcag
cttggcatagcggaatacagcatcagccaagcaaccttggaaaccatttttaatcatttt
gctgcaagtttatga
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