Ricinus communis (castor bean): 8287949
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Entry
8287949 CDS
T01087
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog isoform X1
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu04142
Lysosome biogenesis
rcu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
8287949
04148 Efferocytosis
8287949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rcu04131
]
8287949
Membrane trafficking [BR:
rcu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
8287949
Hops complex
8287949
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS18_solenoid_2nd
VPS11_C
Clathrin
zf-C3H2C3
Beta-prop_WDR36-Utp21_1st
TPR_Vps41
zf_RING_Vps8_fungal
zf-C3HC4_2
OCRL_clath_bd
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
8287949
NCBI-ProteinID:
XP_002534605
UniProt:
B9T8N6
LinkDB
All DBs
Position
7:complement(22928359..22933097)
Genome browser
AA seq
962 aa
AA seq
DB search
MYQWRKFEFFEEKYGGKSKIPEDVSGNINCCSSGRGKVVIGSDEGHVSLLDRGLHFNFSF
LAHSSSVLFLQQLKQRNFLVTVGEDEQIAPQQSAMCLKVFDLDKMQPEGTSSIVPDCIGI
LRIFTNQFPHAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQIDNNN
VSDKSSSSITGLGFRVDGQALQLFAVSPNSVSLFSLQSQPPRRQLLDQIGCNVNSVAMSD
RSELIIGRPEAVYFYEVDGRGPCWAFEGEKKFVGWFRGYLLCVIGDQRSGKDTFNIYDLK
NRLIAHSLAVKEVSHMLCEWGNIILIMNDKSALCIGEKDMESKLDMLFKKNLYTVAINLV
QSQQADAAATAEVLRKYGDHLYSKQDYDEAMAQYISTIGHLEPSYVIQKFLDAQRIYNLT
NYLENLHEKGLASKDHTTLLLNCYTKLKDVDKLNVFIKSEDGVGEHKFDVETAIRVCRAA
NYHEHAMYVAKKAGRHELYLKILLEDLGRYDEALQYISSLEPSQAGVTVKEYGKILIEHK
PAETIEILMRLCTEDGESAKRGSSSGAYLSMLPSPVDFLNIFIHHPQSLMNFLEKYTDKV
KDSPAQVEIHNTLLELYLSNEMNFPAVSQASNGVDISLQAKSGAGRKSKAKSNGKVIADR
KDIYKEKDRVERQEKGLLLLKSAWPADQEHPLYDVDLAIILSEMNAFKEGLLYLYEKMKL
YKEVIACYMQAHDHEGLIACCKRLGDSSKGGEPSLWADLLKYFGELGEDCSKEVKEVLTY
IERDDILPPIIVLQTLSRNPCLTLSVIKDYIARKLEQESKLIEEDRQAIDKYQEDTLAMR
KEIHELRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHQRCLGDNEKECPECAPEYRAV
MEMKRSLEQNSKDQDQFFQLVKGSKDGFSVIAEYFGKGIISKTSNGTSGALRSGSTSSSS
GF
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgtaccagtggaggaaattcgagttcttcgaagagaaatacggaggaaaaagcaagatt
cctgaggatgtaagtggtaatataaattgttgctctagcggtagaggtaaagtcgtgatc
ggctccgatgaaggccacgttagcttactcgatcgcggacttcacttcaatttttcattt
ttagctcattcctcttctgttctctttctccagcaacttaaacaaagaaacttccttgta
actgttggtgaagatgaacaaattgctccacaacaatctgcaatgtgcctcaaggttttt
gaccttgataaaatgcagccagagggaacaagctccatcgtacctgattgtattggaata
ttgcggattttcaccaatcagtttcctcatgcaaagattacgtcatttctagtactagag
gaagctcctccaatcctacttatagctattggattagataatggatgtatttattgcatc
aaaggggacattgcaagagaacgtatcacacgtttcaagctccagattgataataataat
gtttcagacaaaagtagttcttccattaccggtcttggattcagagtggatggtcaagcc
cttcaattatttgctgtatcaccaaattctgttagtctctttagcttgcagagtcaacca
cctagacgccaattgctagatcagataggatgcaatgtcaatagtgtagcaatgagtgat
cgctcggagttgataattggtcggcctgaagctgtatatttttatgaagttgatgggcgt
ggtccttgctgggcatttgagggagagaagaaatttgtagggtggtttcgtggttacctt
ttatgtgttatcggagatcaaagaagtggtaaagatactttcaatatttatgacctgaag
aatcgtttaatagctcatagtctagcggttaaagaagtttctcacatgctttgtgaatgg
ggtaacataatacttataatgaacgacaaatcagctttatgcattggggagaaagatatg
gaaagcaagttagatatgctcttcaagaaaaatctttatactgttgctatcaatcttgtt
caaagtcagcaagctgatgctgctgcaactgctgaagtgctaaggaaatatggagatcat
ctttatagcaaacaagattatgatgaagctatggcccagtatatcagcactattggtcac
cttgaaccttcatatgtaatacaaaagtttctggatgcacaaagaatttacaaccttaca
aattacttggaaaacttacacgagaaggggcttgcttctaaggatcatacgacacttctc
ttaaactgctataccaagttgaaagatgttgacaagctgaatgtatttattaaaagtgag
gatggtgttggagaacataagtttgatgtggagactgcgatacgggtatgccgtgctgcc
aattaccatgagcatgcaatgtatgttgctaagaaggcagggaggcatgaattatatttg
aagatcttacttgaagaccttggcagatatgatgaggccttacaatatatttcgagcctt
gaaccaagtcaggctggtgttaccgtgaaggaatatggtaaaattctcatagagcacaaa
ccagctgagacaattgagatactcatgaggctctgcactgaggatggggagtcagcaaaa
agaggatcttcaagtggtgcatacttatctatgttgccatcacctgttgattttctcaat
attttcatccatcacccacaatctcttatgaattttcttgaaaaatatactgacaaggta
aaggactctcctgctcaagtagaaattcacaatacactcttggaactgtacctgtcaaat
gagatgaacttccctgcagtatcacaagctagcaatggtgtggatatttctctccaagct
aaatcaggggcaggtaggaaatccaaagctaaatcaaatgggaaagtaattgctgatcga
aaagatatatataaggaaaaggaccgtgtagaaaggcaagagaaaggacttcttttgctt
aagagtgcatggccagctgatcaggagcatcccctttatgatgttgatcttgctataatt
ctctctgagatgaatgcatttaaagaaggcctattgtatctctatgagaagatgaaactt
tataaagaggttattgcttgctacatgcaagcccatgatcatgagggattaattgcatgc
tgcaaaaggctgggggattcaagtaagggaggtgagccatctctttgggcagacctgcta
aaatattttggtgaactgggagaagattgctccaaggaagtgaaggaagttttgacttat
atagaaagggatgacatcttgcctcctattattgttcttcagactctgtccagaaatcca
tgcctcacactctctgtcatcaaggactatatagctcggaagcttgaacaagaatcgaag
ctgattgaagaggaccggcaagcaattgataagtatcaggaggacacattggcaatgaga
aaagaaattcatgagcttaggaccaatgcgaggatctttcaactcagcaagtgtaccgct
tgcactttcactcttgatcttcctgctgtacatttcatgtgcatgcattcattccatcag
cgttgccttggtgataatgaaaaagaatgccctgaatgtgctcccgagtacagagctgtt
atggaaatgaagagaagtcttgagcagaattccaaagatcaagatcagttttttcagcta
gtgaaaggttccaaggatggattctccgtgattgcagagtattttggaaaagggatcatt
agcaaaactagtaatggcacctcaggagctcttagatcaggcagcacgtcttccagcagt
ggtttctga
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