Ricinus communis (castor bean): 8287973
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Entry
8287973 CDS
T01087
Name
(RefSeq) probable RNA helicase SDE3 isoform X1
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
rcu
Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8287973
03036 Chromosome and associated proteins [BR:
rcu03036
]
8287973
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
8287973
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
8287973
Chromosome and associated proteins [BR:
rcu03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
8287973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MOV-10_beta-barrel
Glyco_tranf_2_3
Motif
Other DBs
NCBI-GeneID:
8287973
NCBI-ProteinID:
XP_048232077
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All DBs
Position
6:28469068..28473368
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AA seq
651 aa
AA seq
DB search
MLELSFVWGFRKEVLVCMSQFLGFLRGVFGFLKGDGDRNENGSEHRNTSGETTERPCDAP
VLNRPITGSRLSNSAKETGSPYAKPVERTYDAGISSNSSTRYAPVPSYRLPQSSTEKLAS
PANSAPSRPELPTSSSTQSVVPNIHSTKPSPSVPISYSKPSPSFATQAASSSNPVTASPK
APPSAFGTLPSFKQTLAPASSNSNDQQSKGEYILVQKDLSPIYLIPRDIQDLIKRDEVPE
ILRRPLSMSSYKDYFGALLCAEDYYIEKWSEFKLLGITLKLQEAAIFKGPYIRESYEKDE
KIFVAFNMDSSLEKRPFLLSRDFVFAKSSGSKTDLFQGIIYRVERSTTILVEFGEDFHAQ
HYPSMKYDVSFSFNRVCLKRAHQAVEAASDPSFESYIFPCWGSRKIVPSSSPNIYYNNKL
HPDQNSAVRQIIAIQGPPPYLIEGQLCVDKRKWSHCSSNRLSRTGLVVQQAVLEIFRSSR
KHRILICAPINSTCDVLMTSLKEIPETEMFRANAAFREIDGVPSEILASSLYKGECFACP
PLQELQEFKVILSTYMSSFRLHNEGIPAGHFSHIFMLDASSAAEPEAMVALANLANENTA
VIVTGSLGNHPGWVRSNIARKNGLIISYFKRLRERNPYDILDSNYITKLAD
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgttagaactttcatttgtctggggtttcagaaaagaggttttggtctgcatgtctcag
tttcttggattcctgcgaggcgtttttggttttctgaaaggtgatggagacagaaatgag
aatggctcggagcatagaaacacttcaggggaaacaacggagagaccatgtgatgcacct
gtgctaaacaggcccataaccggttcacggctgagtaattcagcaaaagaaactggatca
ccatatgctaagccagtggaaagaacttatgatgctggtatcagttcaaatagttctacc
agatatgcacctgtaccttcctataggctaccgcaatcttcaacagaaaaacttgcatct
cctgcaaattcagctccatcgagacctgaactcccaacaagttcttcgacccaatcagtt
gtaccgaatatacattctactaaaccatctccatctgtcccaatatcatattctaagcca
tctccttcattcgctacacaggcagcatcttcttctaaccctgttaccgcttcacccaaa
gcacctccatcagccttcgggaccttgccatcttttaagcaaactttggctccagcttcc
tcaaattcgaatgatcagcagagcaaaggtgagtatatattggttcaaaaagacttgtca
cctatttatttgattcccagggatattcaagatttgatcaagagagacgaggtgcctgag
attctgagaaggccattgtctatgtcgtcatacaaggattattttggcgctcttctctgt
gctgaggactactacattgagaaatggagtgagttcaaattgctgggtatcactttaaaa
ttgcaagaagcagcaatctttaaagggccatatatcagagaaagttatgagaaggacgag
aaaatctttgtggcatttaatatggactcatcacttgagaagcggccatttcttttatca
agggactttgtctttgcaaaatcttcaggaagcaagactgatcttttccagggtattatc
tatcgcgtggagagaagcaccactatcctagttgaatttggtgaagactttcatgctcag
cattatccgtccatgaagtacgatgttagcttctcatttaacagagtttgtttaaaaagg
gctcatcaagctgttgaagctgcctcagatccttcgtttgaaagttacattttcccttgt
tggggatcaaggaagatcgtcccctcaagttcaccaaatatttattataataataagctt
catccagatcaaaactctgcagttcgacagatcatagccattcaggggccaccaccttat
cttattgagggtcaactctgtgttgataaaagaaaatggagtcactgcagttcgaaccgg
ctatcaagaactggattagtagtccaacaagcagtgcttgaaatttttcgaagctctcga
aagcatcgtattctcatatgtgcacctattaacagcacgtgcgatgtgctgatgacaagc
ttgaaggagattcctgaaactgaaatgtttagagccaatgcagcatttcgagaaatagat
ggcgtaccatctgagatccttgcttcaagtctttacaagggagaatgttttgcttgtcct
ccacttcaggaactccaagaatttaaagtaatattgtctacttatatgagtagctttcgg
ctacataatgaaggaattcctgctggtcattttagccacatttttatgctggatgcctcg
tcagcagctgagccagaggcaatggtggctctggctaatttagctaatgaaaacacagct
gtaattgtcactggttcactgggaaaccatccaggttgggtgcgatccaatattgctagg
aagaatggtctgattatatcgtacttcaaaagacttcgtgaaagaaatccttacgatatt
ctagattcaaattatattacgaagctggccgactga
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