Ricinus communis (castor bean): 8288102
Help
Entry
8288102 CDS
T01087
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8288102
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcu03041
]
8288102
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8288102
Spliceosome [BR:
rcu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
8288102
Complex C
U5 SnRNP specific factors
8288102
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
ResIII
Helicase_C
AAA_22
Helicase_PWI
AAA_30
AAA_11
Motif
Other DBs
NCBI-GeneID:
8288102
NCBI-ProteinID:
XP_002518663
LinkDB
All DBs
Position
6:19961685..19969571
Genome browser
AA seq
2184 aa
AA seq
DB search
MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKSFGDRAF
RGKPPELEEKLKKSKKKKERDPHAEPVPKRQAKRRRLREESVLTSTEEGVYQPKTKETRA
AYEAMLSVIQQQLGGQPLNIVSAAADEILAVLKNESVKTNDKKKEIEKLLNPVPNHVFDQ
LVSIGRLITDFQDVSAGGDAAGNAVGNGDGDDALDDDVGVAVEFEEDNEDDEDESDLDMV
PDDEDDEEEDVAEQNGSGAGGMQMGGIDDEEMQEANVGLSLNVQDIDAYWLQRKISQAFE
QKMDPQQCQKLAEEVLKILAEGGEDREVENKLLLHLSYEMFNLVRILMRNRLKIVWCTRL
ARAKDQQERKQIEEEMMSSGPDLVAILEQLHATRATAKERQKNLEKSIREEARRLKDESG
GDYDRDRRGLVDRDAESGWVKGQPQLLDLESIAFEQGGHLMATKKCDLPVGSYRHTSKGY
EEVHVPALKPRPIASDEKLVKISDMPGWAQPAFKGMQQLNRVQSRVYETALFKADNVLLC
APTGAGKTNVAVLTILQQLGLKMNKEDGSFNHSDYKIVYVAPMKALVAEVVGNLSNRLQE
YGVKVRELSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH
DNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDLKKGLFHFDNSYR
PVPLSQQYIGITVKKPLQRFQLMNDICYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDS
ALANDTLGRFLKEDSASREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRADRQLVEDLF
ADGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQY
DSYGEGIIITGHTELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWLG
YTYLYIRMLRNPTLYGLAPDVLTRDITLEERRADLIHSSATILDKNNLVKYDRKSGYFQV
TDLGRIASYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL
DRVPIPIKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK
RGWAQLTEKALNLCKMINKRMWSVQTPLRQFNGIPNEILMKLEKKDLAWERYYDLSSQEI
GELIRFPKMGRTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVEPF
WVIVEDNDGEYILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTV
LPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNT
DDNVLVAAPTGSGKTICAEFAILRNHQKGPDSVTRAVYIAPLEAIAKERYRDWERKFGRG
LGMRVVELTGETATDLKLLEKSQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG
GQGGPILEVIVSRMRYIASQIENKIRIVALSSSLANAKDLGEWIGATSHGLFNFPPGVRP
VPLEIHIQGVDIANFEARMQAMTKPTYTAIVQHAKNGKPAIVFVPTRKHVRLTAVDLMTY
SSADSGEKPAFMMRSIEELEPFVGRVQDEMLRSTLRQGVGYLHEGLSSLDQEVVSQLFEA
GWIQVCVMSSSMCWGVPLAAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDN
SGKCVILCHAPRKEYYKKFLYEAFPVESHLHHFLHDNFNAEVVAGVIENKQDAVDYLTWT
FMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTLSDLEASKCVAIEEDMDLSPLNLGMI
ASYYYISYTTIERFSSSLTSKTRMKGLLEILASASEYAQLPIRPGEEEVLRRLINHQRFS
FENPRYSDPHVKANVLLQAHFSRHSVGGNLALDQREVLLSSSRLLQAMVDVISSNGWLSL
ALLAMEVSQMVTQGMWERDSMLLQLPHFTKELAKKCQENPGKSIETVFDLVEMEDDERRE
LLQMSNSELLDVVRFCNRFPNIDMSYEVMDGEDVRVGDDITLQVTLERDLEGRTEVGPVD
AARYPKAKEEGWWLVVGDTKSNQLLAIKRVSLQRKSKVKLEFAAPSETGRKSYTLYFMCD
SYLGCDQEYSFNVDVKEAGGPDED
NT seq
6555 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatctaggcggtggtgctgaggcgcatgcccgttttaaacagtacgagtataga
gctaattctagtctagtgctaaccactgactcacgcccacgtgacacgcatgagcccacc
ggtgaacctgagtccctctggggaaaaattgatcccaaaagcttcggtgaccgtgctttt
agagggaagcctcctgaattggaggagaaacttaagaaatctaagaagaagaaagagagg
gacccgcatgcggagcctgtacctaagcgtcaagcgaaaagacgtcgccttagggaagag
agtgtgcttacttctactgaagaaggtgtttatcagcccaaaactaaggagactagagcg
gcttatgaggcaatgttgagtgttattcagcagcaattgggtggtcagcctcttaatatt
gtcagtgcagctgcggatgagattttggcggttttgaagaatgagagcgttaagactaat
gataagaagaaggaaattgagaagttgttgaatcctgttccaaatcatgttttcgatcag
cttgtttcaattggtaggcttattactgattttcaagatgtgagtgcgggtggtgatgct
gcagggaatgctgtgggtaatggtgatggtgatgacgcccttgatgatgatgtgggtgtg
gctgttgagtttgaggaagataacgaggatgatgaagatgagagtgatttggatatggtg
cctgatgatgaagatgatgaggaggaggatgtggcagaacagaatggttctggggctggt
ggtatgcaaatgggtggtattgatgatgaagaaatgcaggaggcgaatgtagggttgagc
ctcaatgtgcaggatattgatgcttattggcttcaaaggaagatatcacaagcttttgag
cagaagatggatccacaacagtgccagaaacttgcagaggaggtccttaaaatacttgcc
gagggaggagaggacagggaagttgagaacaagttactcttgcatctctcttatgagatg
ttcaaccttgttaggattcttatgcgtaacaggctgaagatagtatggtgtactcgtttg
gcaagggctaaagaccagcaagagaggaagcagattgaggaagaaatgatgagttctggt
ccagatttagtagcaattctggagcagttgcatgctacaagggcaactgcaaaagagagg
caaaaaaacttggagaagagtataagagaagaggctcgccggctcaaggacgagagtggt
ggggactatgatagagataggagggggcttgtggatagagatgcagaaagtggctgggtg
aaaggccagccccagttgcttgatctagaaagcattgcttttgagcaagggggtcatttg
atggcaaccaagaaatgtgatcttccagttggttcctacaggcatacaagcaaaggttat
gaggaagttcatgtgccagccttgaagcctagacctatagcatctgatgagaagcttgtc
aagatatccgacatgccaggttgggcacaacctgctttcaaagggatgcagcagttgaat
agagtacagagtagagtttatgaaactgcgctttttaaggcagataatgttctcctgtgt
gcccccactggagcaggaaaaactaatgttgcagtactcaccatacttcagcaacttgga
ttgaagatgaataaagaagacggttcattcaaccatagcgactataagatagtctatgtg
gcacctatgaaagctcttgttgctgaagttgttggtaatttgtccaatcgtctgcaggag
tatggtgtgaaggttagggagctgagtggagaccagtcattgactcgccaacaaattgaa
gaaactcaaataattgtgactactcctgagaagtgggatattattactcggaagtctggg
gatcgcacttacactcagcttgtgaaactacttattattgatgagattcatcttctccat
gataatagaggacctgtccttgagagtattgttgctagaactgttagacaaattgaaact
actaaagaacatatccgcctagtgggattatctgcaacgctccctaattatgaagatgtg
gcattgtttttaagagttgaccttaaaaaaggactcttccattttgacaatagttacaga
cctgtccctctctctcaacagtatattggcatcactgtgaagaagccactgcagaggttt
cagttgatgaatgatatctgttatgaaaaggtgatggcagttgctggaaagcatcaagtt
cttatttttgtccactcaagaaaggaaacggcaaagacagctagagcaatacgggattct
gcacttgctaatgatactctgggcagattcttgaaagaggacagtgctagccgtgagatc
cttcaaagtcatacagatatggtaaaaagcaatgacctgaaagatcttctgccctatggt
tttgcaattcatcatgctggcatgacaagggctgaccgtcaacttgttgaggatctgttt
gcagatggacatgtacaagtgttggtttctactgcaactcttgcttggggtgtcaatttg
cctgctcatactgtgattattaaagggactcagatatacaatccagaaaaaggagcatgg
actgaattaagtccgttggatgttatgcagatgctgggtcgtgcaggaagaccccagtat
gattcatatggggaaggaattatcattactggccatactgaacttcaatactatctgtct
ttaatgaatcaacaacttcccattgaaagtcagtttgtgtccaaactggctgatcaattg
aatgccgaaattgttcttggaactgtacaaaatgctagagaagcttgcaactggcttggc
tacacttacttgtatattcgtatgctgcgaaacccaacactgtatggcttagcaccagat
gttctcacaagagatattacactggaggagaggagggctgatttgattcattcttctgcg
actatattagacaagaataatctggttaagtatgatagaaaaagtggatatttccaggtt
actgacttgggtcgcatagctagctattactatataactcatggcacaatatccacgtat
aatgagcatctgaagccaacaatgggggatatagagttatgtcgtctgttctcattgagt
gaagaatttaagtatgtgacagtgagacaagatgagaagatggaactagcaaagctgttg
gaccgtgttccaattccaatcaaggaaagcctggaggagcctagtgctaagattaatgtt
ttgcttcaagcatatatttcacaacttaagcttgaggggctttctcttacatcagacatg
gtgttcatcactcagagtgcgggccgtcttcttcgagctctttttgagattgtcctgaag
agaggttgggcgcaattaactgagaaagctttgaacttatgtaaaatgatcaacaagagg
atgtggagtgtccagacgccactgcgccaattcaatgggatcccaaatgaaattctgatg
aagttggagaagaaagatttggcttgggaaaggtattatgatctctcatcacaggagatc
ggtgaactcattcgttttccaaagatgggcagaacattacacaagttcattcaccaattt
ccaaagctaaacctggcggcacacgttcagccaatcactcgtacagtgttgagggtggaa
cttaccataacaccggacttccaatgggaggataaggttcatggttatgtggagccattt
tgggtcattgtggaggataatgacggtgaatatattctccaccatgaatactttatgctg
aagaagcagtacatcgatgaggaccacacattgaacttcacagtgcctatctatgagcca
ttgccgcctcagtatttcatccgtgttgtgtcagataagtggcttgggtcacaaactgtt
ttgccagtgtcttttaggcaccttatcttaccagaaaagtatcctcctcccacagagtta
ttggacttgcaacctttgcctgtgactgcattgcggaatccatcatatgaagctctttat
caagattttaaacattttaatcctgtccaaactcaggtctttactgttctgtataataca
gatgacaatgtattagttgcagcaccaacaggtagtgggaaaactatatgtgctgaattt
gctatattgagaaatcatcaaaagggacctgatagtgttacgcgcgctgtgtatattgca
cctcttgaagcaattgccaaggagcgttatcgtgattgggagcggaaatttggtcgaggt
cttggcatgcgggttgttgaattaactggggaaacagcaacagacttaaaactgcttgaa
aagagtcaaataatcatcagtactcctgaaaaatgggatgctttgtctcgtcgctggaaa
cagcggaagtatgtccagcaggttagtctatttattattgacgagctccacttgattggg
ggtcaaggtggtccaatcttggaagtgattgtttctaggatgaggtatattgctagtcag
atagagaataagattcggattgtggccttgtcatcttctcttgcaaatgctaaggatctt
ggagaatggataggagccacctcgcatggcctttttaatttccctcctggagtgcgccca
gtccccttggaaatacacattcagggagtggatattgcaaactttgaagcaaggatgcag
gccatgacaaaaccgacatacactgcaatagttcaacatgccaaaaatggaaagcctgct
attgtttttgttcctacaagaaagcatgtgcgtcttactgcagtggatctaatgacatac
tcaagtgcagacagtggagagaagcctgcttttatgatgcgatccatagaagaactggaa
ccttttgttggcagggttcaggatgaaatgttaagatccactttacgtcaaggagttggg
tacttgcatgagggcttgagtagtttggatcaagaagtagtgtcacagctcttcgaagct
gggtggattcaggtttgtgttatgagcagttcaatgtgttggggagtgccattggcagca
catttggtggttgtgatgggaactcagtactatgatgggcgtgaaaatgctcacacagat
tatccagttacagatctcttacagatgatgggtcatgctagtcgacctttactagataac
tctggaaagtgtgtcatcctttgtcacgcaccacgtaaagaatattacaagaagttttta
tatgaagcattccctgtagaaagtcatttgcaccatttcctgcacgacaattttaatgca
gaagtagttgctggagttattgaaaacaagcaggatgcagtagattaccttacatggact
ttcatgtataggcggctcacacaaaatccgaactactacaatctccagggagttagtcat
aggcatctttctgatcatctttcagagcttgttgagaacacattgagtgatttggaagca
agtaaatgtgttgctattgaggaggacatggatctttctccattgaaccttggcatgata
gcgtcttactattacatcagttatactaccattgagcgtttcagttcttctttgacttct
aaaacaaggatgaagggtcttctggaaattcttgcttcagcttcagagtatgcacagctt
ccaatacgacctggagaggaagaggtgcttcgtaggctgatcaatcaccagaggttctca
tttgaaaatcccagatacagtgatccacatgtgaaggcaaatgtactgttacaagcccat
ttctcaaggcattctgtgggtggaaacctagcattagaccagcgagaggtgctcctttct
tccagcagattgcttcaagcaatggttgatgttatttcaagcaatggttggttgagcctt
gctcttctagcaatggaagttagccaaatggtgacacaggggatgtgggagcgtgattcc
atgcttctccaacttccacattttacgaaggagctggccaagaaatgccaagagaatcca
ggaaagagtatagagacagtctttgatttggtagagatggaagatgatgagaggcgggag
ctactccaaatgtccaactcagaattgttagatgttgtaaggttctgcaaccggttcccc
aacattgatatgtcatatgaggtaatggatggggaggatgtgagggtgggagatgatatt
actctgcaagtcactctagagcgtgatctggaggggaggactgaggttggaccagttgat
gctgccaggtatcctaaagctaaagaagaaggttggtggcttgttgttggcgataccaag
agtaaccagctgctggccatcaagagggtctctctccagagaaagtcaaaggtgaaactc
gagtttgcggccccatcagaaactggaaggaagtcgtatactctctacttcatgtgtgat
tcttatctgggatgtgaccaggaatatagctttaatgttgatgtcaaagaagcaggtggc
ccagatgaggattaa
DBGET
integrated database retrieval system
