Ricinus communis (castor bean): 8288139
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Entry
8288139 CDS
T01087
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03020
RNA polymerase
rcu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
8288139
09124 Replication and repair
03420 Nucleotide excision repair
8288139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcu03021
]
8288139
03400 DNA repair and recombination proteins [BR:
rcu03400
]
8288139
Transcription machinery [BR:
rcu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
8288139
DNA repair and recombination proteins [BR:
rcu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
8288139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
pAdhesive_11
Motif
Other DBs
NCBI-GeneID:
8288139
NCBI-ProteinID:
XP_002518700
UniProt:
B9RYB6
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All DBs
Position
6:20160862..20164004
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AA seq
318 aa
AA seq
DB search
MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV
TSKDLYSSDHTVVPVDFSDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS
PAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTYD
EEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASHLVLNAIEILKQKLDAVRLSED
TVEADDQFGELGAHMRGG
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggaaggagcatcctaccaacgctttccaagaatcaaaatccgagaactcaaagacgac
tactgcaaattcgagctccgagacacagacgcgtcaatggccaacgcgcttaggcgcgtg
atgatagcagaagtacccactgtcgctatcgacctggtcgaaatcgaagttaactcttca
gttctgaacgacgaattcatcgctcatcgtctcggtcttattcctcttaccagtgaacgt
gcaatgagcatgcgcttctcacgtgattgtgacgcttgtgatggtgatggtcaatgtgat
tattgctctgttgagtttcaccttcgtgctaaatgtatcactgatcaaaccctagatgtt
actagtaaggacttgtatagctctgatcacacagtcgttcctgttgatttttccgattct
tctggttatgattcctctgagcaaagggggattattattgtgaagctgcgaagagggcag
gaattgagattgagagcaattgctaggaaagggattgggaaggatcatgcaaaatggtca
cctgcagcgactgtaacattcatgtatgagccagatattcatatcaacgaggatctgatg
gaaagtttgtcacttgaggagaaacagagttgggttgaaagtagtcctactaaagtgttt
gatatcgatcctaatactcaacaggttgtagtggttgatcctgaagcatacacttatgat
gaagaagtaatcaagaaagcagaatctatggggaagccagggcttgtgaatatccaggcc
aaggaagacagttttatattcacagttgaatcaactggtgcaattaaagcttctcatctg
gtactcaatgccatagaaattctgaaacaaaaattggatgctgttcgcctttcagaggac
actgtggaagctgatgatcaatttggagagctaggtgcccacatgcgcggaggatga
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