Ricinus communis (castor bean): 8288288
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Entry
8288288 CDS
T01087
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
rcu
Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcu03021
]
8288288
03036 Chromosome and associated proteins [BR:
rcu03036
]
8288288
Transcription machinery [BR:
rcu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
8288288
Chromosome and associated proteins [BR:
rcu03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
8288288
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Tex_central_region
Spt6_S1
HHH_3
HHH_9
HTH_44
SH2
OB_PDCD11
Motif
Other DBs
NCBI-GeneID:
8288288
NCBI-ProteinID:
XP_015578078
UniProt:
A0ACL1FYL0
LinkDB
All DBs
Position
10:complement(26335028..26346457)
Genome browser
AA seq
1635 aa
AA seq
DB search
MGKNVVSDEEDEVEYEDEERGPLGADAIDDDDEEDEEGQDEYEKDDFIVDDIEEEEEEAG
EEEDRADSDEERHKKKKKKKKRESVDVLDEDDYELLRDNNAYHHRPKDSKKFKRLKKAQR
DSDEERFGLSDEEFDGSGKGGRTAEERLKRTLFGEDEGVPLDEDIAEEEEQAEEEEDGDF
GEEDEMADFIVDEEEVDENGAPIRRKKLKRKKSRQAPGVASSSLQEAHELFGDVDDLLQR
RKQELESNEWKETGLDKEFEPTILSEKYMTEKDEQIRVTDIPERMQIAEESTGSPPTDEM
SITAETNWILHQFASGVVPFFRQKGDQSNEGLQDVPFDRHDISRFLELHHGQKLDTPFIA
MYRKEDCLSLLKDPEQHDIDDENPDKSDRKPILKWHKVLWAIQDLDRKWLLLQKRKNALN
LYYNKRFEEESRRIYDETRLNLNQQLFKSILKSLEAAESEREVDDVDAKFNLHFPPGEVG
VDVGQYKRPKRKSQYSICSKAGLWEVANKFGFSAEQLGMALHLIKVGVFLENAKETPEEM
ASNFTCAMFETPQAVLKGARHMAAVEISCEPSIRKHVRAIYMENAVVSTNPTPDGNVAID
YFHQFASVKWLREKPMNRFEDAQWLLIQKAEEEKLLQVTFKLPERIMNKLNSDFKEHYLS
DGVSKSAQLWNEQRSLILEDALNNFLLPSMEKEARSLLTSRAKSWLLWEYGNILWNKVSV
GPYQRKENDVSLDDEAAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYAGSLTLRSQNIT
DQQQKKRDQQLVLKFMMDHQPHVVVLGAVSLSCTKLKDDIYEIIFKMVEENPRDVGHEMD
ELSIVYGDEALPRLYENSRISSDQLAGQPGIVRRAVALGRYLQNPLAMVATLCGPAREIL
SWKLSPLENFLNSDEKYAMIEQIMVDVTNQVGLDINMATSHEWLFAPLQFISGLGPRKAA
SLQRSLVRAGAIFTRKDFVTVHGLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIH
PESYGLAQEMAKDVYEMDNGDGNDDDEALEMAIEHVRDRPNLLKSLDLDEYLQDKKRENK
KETFKNVKGELIQGFQDWRKQYKEPTQDEEFYMISGETEDTLAEGRIVQATVRRVQGGKA
ICVLESGLTGMLSKEDYADDWRDIPELSDRLQEGIILTCKIKSIQKNRYQVFLVCRESEM
RSNRLQQVRILDPYYHEDRSSLQSEQEKARKEKELAKKHFKPRMIVHPRFQNITADEAME
FLSDKDPGESIVRPSSRGPSYLTLTLKVYDGVFAHKDIVEGGKEHKDITSLLRIGKTLKI
GEDTFEDLDEVMDRYVDPLVAHLKAMLNYRKFRRGTKAEVDEQLRIEKADYPSRIVYSFG
ISHEYPGTFILTYIRSTNPHHEYVGLYPKGFKFRKRMFEEIDRLVAYFQRHIDDPMHDAA
PSIRSVAAMVPMRSPATGGSSGASMGSGWGGSTNDGSWRAQSFDRDRSSGPGSRTGRNDY
RSGSNRDSHQSGLPRPYGGRGHGRGSYNSRGNSTGNDKQESGYDNSKWDSVAKDSDAGWG
SFPGAKVQNSPGREAFPGGWGTGGSGSGSGSVNGNWGHGTGGGSDKGNSGWGSSLKRGFS
QSQGDGGWSGGSGGW
NT seq
4908 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaaacgtagtatctgatgaagaagatgaggtcgaatacgaagacgaggagagg
ggacccctgggtgctgatgccatagacgatgatgatgaggaagacgaagaagggcaagat
gaatatgagaaggatgattttatagtagatgatattgaggaagaagaagaagaagctggt
gaggaagaggacagggctgacagtgatgaagaaagacacaagaagaaaaagaaaaagaag
aaaagagaatctgtggatgtactagatgaagatgattatgagctgcttcgagacaataat
gcttatcaccatcggccaaaggatagcaaaaaatttaagcggttgaaaaaagctcagagg
gattctgatgaggagcggtttgggctttctgatgaggagtttgatggaagtggtaagggc
ggccgtacagctgaggagagacttaagcgcaccttatttggtgaagatgaaggagtgcca
cttgatgaggatattgctgaggaggaggagcaggcagaagaggaagaggatggagacttt
ggtgaggaggatgagatggcagattttattgtggatgaagaagaagttgatgagaacggg
gctccaattagacgaaaaaagctgaagagaaaaaaatctaggcaggcaccaggagttgca
tcatcttctttgcaggaagctcatgaactatttggtgatgttgatgacttgttgcaacgc
cgcaaacaggagttagaatctaacgagtggaaggaaacaggattggataaggaatttgag
ccaactatactttctgagaaatacatgactgagaaagatgagcagattcgggtgactgat
attccggaaagaatgcagatagctgaggaaagcactggttctcctccgacagatgaaatg
agtataacagctgagaccaactggatattacatcaatttgcaagtggcgtggtgcctttc
tttcgccagaaaggagaccagtcaaatgaagggctgcaggatgtgccttttgataggcat
gacatcagccgatttttggaattgcatcatgggcagaagttagataccccattcattgct
atgtaccggaaggaggattgtttaagcctgttgaaggatcctgagcaacatgatattgat
gatgagaatcctgataaatcagacagaaaacctatactcaagtggcacaaggtgctttgg
gctattcaggacttggataggaagtggctacttcttcaaaaacgaaaaaatgctctcaat
ttgtactataataaacgatttgaagaagaatctcgccggatatatgatgagacaaggctt
aatctaaatcagcagctttttaagtcgattcttaagtcgctcgaggctgcggaatccgag
agagaagttgatgatgttgatgctaagtttaacttgcatttccctccaggtgaggtaggt
gttgatgtgggacagtataagaggcccaaaaggaaatcacaatatagtatctgcagcaag
gctggcctttgggaggttgcaaacaaatttggttttagtgccgagcaacttggaatggct
ttgcacttgatcaaagtgggggtctttctggagaatgcaaaggaaacaccagaggagatg
gcttcaaactttacgtgtgcaatgtttgaaactccccaagcagttcttaaaggagccagg
cacatggctgcagttgagataagctgtgagccaagtattaggaaacatgtccgtgctata
tatatggagaatgctgttgtatccacaaatccaacgccagatggaaatgtggcaatagat
tattttcatcaatttgctagtgtgaagtggctgcgtgaaaagccaatgaatagattcgag
gatgctcaatggctgcttatccaaaaggctgaagaggagaagcttctacaagtgacattt
aagcttccagaaagaataatgaataagttgaacagtgacttcaaagagcattatcttagc
gatggtgttagtaaatctgctcaactctggaatgagcagaggagtttgatactggaggat
gcactaaataattttctcttaccttcaatggagaaagaagcaagatccttgctgacaagt
agagccaaaagctggttgctttgggaatatggtaacattctctggaataaagtttctgta
ggcccgtatcaaaggaaagaaaatgatgtttccttagatgatgaagctgctccaagggtc
atggcctgctgttggggccctgggaagccagccaccacttttgtgatgttagattcatca
ggggaggtgctagatgtcctttatgctggatccctcacattgcgatctcaaaacattact
gatcagcaacaaaagaaacgtgatcagcaacttgttttgaagttcatgatggaccaccaa
ccacatgtggttgttcttggagcagtgagtttgtcttgtacaaaacttaaggatgatatt
tatgagatcatttttaagatggtagaggaaaatcctagagatgttggacacgagatggat
gaactgagtattgtgtatggtgatgaggctttgcctcgactctacgaaaattctcgaatt
tcttctgaccaactagctgggcagccaggcattgttaggcgagctgttgctcttggccgt
tatttacaaaatccattggcaatggttgcaacgctttgtggaccagcaagagaaattttg
tcttggaagctcagccctttggagaattttctcaattctgatgagaaatatgcaatgatt
gaacagattatggtagatgtcacaaatcaggtaggccttgacattaacatggctactagc
catgaatggttatttgcccctttgcagttcatttctgggcttgggcctagaaaggcagca
tccttgcagaggtctttggtaagggctggagcaatcttcactcgaaaagactttgttaca
gtccatggacttggcaaaaaggtgttcgtaaatgcggttggttttttgcgtgtccggcgt
agtgggttggctgctagcagcagccaattcattgatttgttggacgatacaaggatacat
ccagaatcttatggtctagcacaggagatggccaaagatgtttatgaaatggacaatggt
gatggaaatgatgatgatgaggcactggaaatggcaatagagcatgttagagatcggcct
aatttattgaaatctcttgatcttgatgagtatctccaggataagaagcgtgagaataaa
aaggagactttcaagaatgtaaaaggggaattgatacagggttttcaggactggcgtaaa
cagtataaagaaccaacccaggatgaggaattttatatgatctcaggtgaaactgaggat
acccttgctgaagggagaatagtacaggccactgtccgcagggtgcaaggtggaaaggca
atatgtgtactagaatcaggattgactgggatgctttcgaaggaagactatgcagatgat
tggagggatatacctgagttgtctgacaggctgcaggaaggcataatacttacttgcaag
attaaatcaatccaaaagaataggtatcaggtattcctagtttgtagggagagtgagatg
agaagtaaccgacttcagcaagttcgcattttagatccatattaccatgaagatcgaagc
agtttgcagagtgaacaagaaaaggctcgcaaagagaaggagcttgcaaagaaacacttt
aaacctaggatgatagttcatcctcgcttccagaatataacagctgatgaagcaatggag
ttcttatctgacaaggatcctggggaaagtatcgttcggcccagttctcgcggcccatct
tatttaactcttactctaaaagtttatgatggggtttttgctcacaaggacatagttgaa
ggtggaaaggagcacaaggacattacaagtttacttcgcattgggaagacactgaaaatc
ggggaggacacttttgaagatctggatgaggtaatggatcgctatgttgatcccttggta
gctcatctgaaggcaatgctaaattatcgcaagttcagaaggggcactaaagcagaagtt
gatgagcaactcaggattgagaaggcagactacccttctagaatagtttattcttttggc
atttctcatgagtatccaggcacattcattctgacttatattagaagcacaaatccacat
catgagtatgttggtctatatcccaagggattcaagtttcgcaaaaggatgtttgaggaa
attgatcgactagtggcatattttcaaaggcatattgatgatcccatgcatgatgcagca
ccatcaattagatcagttgctgccatggtaccaatgcgaagccctgcaactgggggctct
tcaggggcatccatgggtagcggttggggtggttccacaaatgatggcagttggagagct
cagtcttttgaccgcgatcgttcttctgggccaggttccaggacaggccgaaatgattat
agaagtggcagtaatcgagatagtcatcaaagtggattaccaaggccatatggtggtcga
ggacatggtcggggctcttataatagcagaggaaatagcactggcaatgacaagcaagaa
tctggttatgacaattccaaatgggattcagttgctaaggatagtgatgcaggttggggc
agtttcccaggtgctaaagtccagaactctcctggcagggaagcttttcctggtggctgg
ggaactggtggcagtggcagtggcagtggaagtgtcaatggcaattgggggcacggaact
ggtggtggctccgataaagggaattctgggtggggtagcagtttgaagaggggcttttca
cagtcacaaggtgatggtggatggtccgggggcagtggtggttggtga
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