Ricinus communis (castor bean): 8288386
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Entry
8288386 CDS
T01087
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8288386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcu03021
]
8288386
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8288386
Transcription machinery [BR:
rcu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
8288386
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
8288386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
8288386
NCBI-ProteinID:
XP_002528590
LinkDB
All DBs
Position
10:15805176..15812781
Genome browser
AA seq
1096 aa
AA seq
DB search
MEMESTRRSFDRSREQAAGGGALKKPRLTEDQTNPNGRPFRPATATSLPPSSAARFRVIN
DRDSEVGGGGGAYHPQPQQYHELVSQYKTALAELTFNSKPIITNLTIIAGENLHAAKAIA
TTVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPPVHSSM
RHLFGTWKGVFPPQSLQMIEKELGFASALNGSSSSAATSRLDSQSRRSIHINPKILEIQH
LQQSSRAKGMATDLTVPIPNTAEDVERPERAASIAAGRSWVDPPVKMHNIQHTQREILSD
PGHEKKIGSTYGDFEYNSEISRISGLGIGRTSGRVAAEGHEKPWYGAGNSATETISGQKN
GFTVKHGFPNYSTSKPVNVDLHLQRTQSNASKSTTAVSASWKNSEEEEFMWDMHSRLSDH
DAANLSITSRKDRWTPDGSEKLEFENQFRKPQNALEVMSRFERETSSDLQSTEQREQISL
GHRLSSPWRLKESHPTDGLLIPGSSGSNTGQTDGYSATLGGLSASSSLARMPVRPHTGNS
GSGFSANTKSGSHGTLAQQRFQSPGAALPSGQSPVHQNPLSPSFPALYPNQQFQSSAEQD
LPLSQSLPRPDYKTHQLSGNLLPSKVQPGSLKRLQNEDSPTSAPPLPSIQLNRQYPFSQP
RQAESKHVEPSGQIKKPHLIPVSNIGTSSTSESSAPDMSTPLSAQTSGQSSTSSLLAAVM
SSGILSSITNGGLPSKSFQDVGKTPSQSSIQPPLPSGPPPQYKSSGARISSASAPLSDND
TSVTSNISEKKEEQPPLPPGPPPSSIQSSNSVNKAANPISNLLSSLVAKGLISASKSETS
SPLPPESPTPSQSQNPTITNSSSKPASSVPASSATSLSSTKDEASFPKPDVKSSAAVPQP
TAPEIESLIGLEFKSDVIRESHPHVIGALFDDFPHQCSICGLQLKLKERLDRHLEWHIWS
KPEPDGLNRVRRWYADLGNWVAGKAEIPFGIESSVSMDEFGRTVDEDEPMVLADENQCVC
VLCGELFEDYYSQQRKKWMFKAAMHLTLSLKGGDIGTANENSKGPIVHVNCMSESSVHDL
ELTSGTKMVRHSLEKG
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagtacgcgtagatcattcgatagatcaagagaacaagcagcaggagga
ggagcgttaaagaagccccgattaacagaggatcaaacaaaccctaacggccgtccgttt
agaccagctactgcgacatcattaccgccttcttccgcagcgagatttagggtaattaat
gacagagattcagaagttggcggcggtggcggcgcgtatcatccacagccacagcagtat
cacgagctagtgagtcagtacaagacggctctagcggaattgacttttaattcgaagccg
attattactaatttgactataattgctggagagaatcttcatgcagctaaagctattgct
accactgtttgcgctaatattcttgaggttcccagcgatcaaaagttgccatcactttat
cttttagacagcattgtaaagaatatcgggagggattacataaaatattttgctgccaga
ctacctgaggtgttctgcaaggcatacaggcaggttgatcctcctgtgcattcgagtatg
cggcatctttttggaacttggaaaggagtcttcccacctcagtcacttcaaatgattgag
aaggaacttggctttgcttctgcattgaatggttcgtcgtccagtgctgcaacttcgagg
ctggattctcagtctcggcggagtattcatattaatcccaagatcttggaaatacagcat
cttcagcagtcaagtagggcaaaaggaatggctactgacctgactgttcccatacccaac
acagcagaggatgttgagaggccggaaagagcagctagtattgctgctggacgctcatgg
gtagatcctcctgttaaaatgcataacattcaacacactcaaagagaaatactaagtgat
cctggtcatgagaagaaaattggttccacttatggagattttgaatataattctgaaatc
tcaaggatctcaggcttgggaattggaagaacaagcggaagagttgctgccgaaggacat
gaaaaaccttggtatggggctgggaacagtgctacagaaacaatatctggccagaaaaat
gggtttactgtgaagcatggatttccaaattactcaacatccaagcctgttaatgttgat
ttgcatctacagcgaacacagagcaatgcaagtaaaagcaccactgcagtgtctgctagc
tggaaaaactctgaggaagaggagtttatgtgggatatgcattctaggttatctgatcat
gatgcagccaatctctccattacctcgaggaaagatcgttggactcctgatggttcagag
aaattggagtttgagaatcaattcagaaaaccacaaaatgcacttgaggtgatgtcaagg
tttgagcgagaaacttcttctgacttgcaatccactgaacagagagaacaaatttctctt
gggcatcgtttatcctctccatggcgactgaaggagtctcatccaactgatggcctgtta
attcctgggtcttctggttctaatactggtcagacagatggctactctgctactcttggt
gggttgagtgcaagttcctccttggccagaatgcctgttcgaccacatacggggaactca
ggctctgggttttcagcaaatacaaaatcagggtctcatggaacgttagcacaacaaagg
tttcagtctcctggggctgcattgccatctggacagtcacccgtgcaccaaaacccactg
tcaccttcatttccagcactttatccgaatcaacaatttcaaagttcagctgaacaagac
ctcccgctatctcaatcactacctcgccctgactataagacccatcaattgtcaggaaat
ttgctcccgtcaaaagtacagcctggcagtttgaaaagactgcagaacgaagactcgcca
acttcagcgcctccgctaccttctatacaactaaaccgccagtatcctttttctcagcca
agacaagcagaatccaaacatgttgaaccctctggtcagatcaaaaagccgcacctgatt
cctgtttccaacattggaacttcatcaacatcagaaagttctgcaccagacatgtcaact
ccactcagtgcacaaacttcaggacaatcaagcacaagtagtttgttggctgctgttatg
agtagtggaattctctctagtataaccaatggtgggcttcctagtaaatcttttcaggac
gttggaaagacaccatcacagtccagcattcagcctcctcttccaagtggccctcctcca
caatataaatcttctggggcaaggattagttcagcatcagctcctctgtcagataatgat
acatcagttacctcaaatatttctgagaaaaaagaagagcagccaccgctgcctcctggt
cctccaccttcatctatacaatcatcaaattcagtgaataaggctgcgaacccaatatca
aaccttttgagttcattagtagccaagggtttgatatcagcatcaaaatcggagacatcc
tctcccttgccgcctgagtcacctactccatcacaatcacagaacccaaccattactaac
tctagctccaaaccagcttcctctgtcccagcatcttctgctacatctctttcatccacc
aaggatgaagcatcctttcccaaacctgacgttaaaagctctgctgcggtgcctcagcca
accgcaccagagatagaaagtctcataggattggagttcaagtcagatgttatccgagaa
tcacatccacatgtgattggtgcattgtttgatgactttccacatcaatgcagcatatgc
ggcttgcaacttaagcttaaggaaaggcttgataggcacttagaatggcatatttggagt
aagccagaaccagatggtttaaatagggtgaggagatggtatgcagatttagggaactgg
gttgcgggaaaggctgaaattccatttggaattgagtcatctgtttccatggatgaattt
gggaggacagtggatgaggatgagcctatggttcttgctgatgaaaaccaatgtgtatgt
gttttgtgtggtgagctatttgaagattattatagtcaacaaaggaagaaatggatgttc
aaagcagcaatgcacttgacactctccttgaagggcggtgatataggaactgcaaatgag
aattctaagggtcccattgtgcatgtaaactgcatgtcagaaagttcagttcatgacttg
gaactgacaagtggtactaaaatggtaaggcactctttagaaaaaggataa
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integrated database retrieval system
