Ricinus communis (castor bean): 8288510
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Entry
8288510 CDS
T01087
Name
(RefSeq) transcription initiation factor TFIID subunit 4b isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
8288510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcu03021
]
8288510
03036 Chromosome and associated proteins [BR:
rcu03036
]
8288510
Transcription machinery [BR:
rcu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
8288510
Coactivators
SAGA/TFTC/STAGA complex
8288510
Chromosome and associated proteins [BR:
rcu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
8288510
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
RST
SPMIP10-like
Motif
Other DBs
NCBI-GeneID:
8288510
NCBI-ProteinID:
XP_002510115
UniProt:
B9R722
LinkDB
All DBs
Position
2:complement(3823009..3828734)
Genome browser
AA seq
925 aa
AA seq
DB search
MDPSIMKLLEEDEDESMHSGADVEAFQAALNRDIGGDASTSQPSDTGTALSHETNQTPSL
PSANWQSTIQDENENAPSQQQQQQPQQQEQHSLVTELKQHESAGENQQLKNDVKQESSHL
PLHQKQPQDTVQQSQAEQAPVQTPRTIRTQISETNTMPKSEPDKMQIPDTESQYMNVQNM
GNQQTMGPEQPSNPKNQFKPIPFMLLLPTLKPHLDKDRDMQLEILFNKLRRNQVPKEQFV
RLMRGIVGDQVLRLAVEQWQSQQGSRQSQLQSQAFGRQHNVRMPVSATASSAVQVLADSS
YPPAEGNAHRPRGVEHLPDSHGMQASQFSSPSTSTLSQDRERSSISVPGHSKQQQQHLHF
PQNSFSTYGSSSGTHHPYSGTNINTSGSSMKTQPHDLQMRQISHSTMASTQIGGSTPTLN
MVHVSKFERPNSVSDPSRVQSGSMSQYNNKSALPQNSIPWQAPTNKEQTSPLFPSTNYVK
QEPLEQATDQQQKPQLSNPQGLSAAPGEQGNAVPVNSKEDSLEKPSSKVGFSNPSTAVPS
NSVSPSIAIQPDPNIQAGPRFPSGAASVGVNARTPTKKLSIGQKKPLEALGSSPPMSSKK
QKVSGAFLDQSIEQLNDVTAVSGVNLREEEEQLFSGSKEDSRVSEASRRVVQEEEERLIL
QKTPLQKKLAEIMVKCGLKNINNDVERCLSLCVEERMRGLISTLIRLSKQRVDAEKSRHR
TVITSDVRQQIMTMNQKAREEWERKQAEAEKLRKVNEPEGDNGVEGDKEKDDGRVKAIKG
NIPANKEEDDKMRTTAANVAARAAVGGDDHLSKWQLMAEQARQKREGGIEAASGSYSAKE
VTRKPQFTSGKSMKDNQEPEKRSPAAASTGVRKVGRNQAFTPQSKVARSISVKDVIAALE
REPQMSKSTLIYRLYERVQSDAPTE
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggacccttcaataatgaagctcctcgaagaagacgaggacgagagcatgcattccggt
gctgacgtggaggctttccaggcagccttaaatcgggatattggaggtgacgcatccact
tctcagccgtctgatacgggtacagctttgtctcatgaaaccaatcaaactcccagtctg
ccatccgcaaattggcaaagtaccatacaagatgaaaatgagaatgctccaagtcagcag
cagcagcagcaaccacaacagcaagagcagcactcccttgtaacagaactaaagcagcat
gagtctgctggtgagaatcagcaactaaagaatgatgtcaaacaggaatccagtcacctt
ccattacatcagaaacaaccccaagatactgttcaacaaagtcaggcagaacaagctcct
gttcagactcctcgaacaatcaggacgcaaatatctgaaacaaatacaatgccaaaatct
gagcccgataaaatgcaaattccagacactgaatcccaatatatgaatgtacaaaatatg
ggtaatcagcagactatgggcccggagcagcctagtaacccaaagaatcaattcaagccg
ataccattcatgttattactgcctaccttaaagccccatctcgacaaagacagggacatg
cagcttgaaattctgtttaacaaactgaggagaaatcaagttccgaaagaacaatttgtc
agactcatgagaggtattgtaggggaccaagtgcttagactggcagtggaacagtggcaa
tcccagcaaggctccaggcaatcccagttacagtctcaagcctttggacgtcaacataat
gtaagaatgcctgttagtgctactgcatcttcagcagtgcaagtcctggctgattctagc
tatccacctgcagaaggtaatgctcatagacctcgaggggtggaacatctgccagattct
catggaatgcaagcaagccaattttcttcccccagtactagcacactcagtcaagatagg
gagcgatcttcaatctcagtgccaggccatagtaagcagcagcagcaacatttgcacttt
ccacagaattctttttcaacgtatggcagtagcagtggtactcatcacccatattccgga
acaaacatcaatacttctggatcatccatgaagactcaacctcatgatttacagatgagg
caaatatcacattcaaccatggcttcaactcaaataggaggttcaacgccaacattgaac
atggtgcatgtctcaaaatttgagaggccaaattctgtttctgatcccagcagagtacag
agtggttctatgtcccagtataataacaaatcagcattgccacaaaattcaattccatgg
caagctcccacaaacaaagagcaaacttctcctctgtttccgtcaacaaattatgtgaaa
caggaacctcttgaacaggccactgaccagcagcagaaaccccagttgtctaacccacag
ggtttgtctgctgcacctggtgaacaaggtaatgcagtgcctgtaaattcaaaagaggac
tctttagagaagccgtcttctaaagttggtttctctaaccccagtactgcagtgccctca
aattcagtttctccttccattgctatccaaccggaccctaacatccaggcaggtcctcgg
ttcccgtctggagctgcttctgttggagttaatgcaagaacacctacaaaaaagctttct
attggtcaaaagaagcctcttgaagcacttggttcctcgccacctatgtcaagtaaaaag
caaaaggtatcaggggcctttctggatcaaagcattgaacaacttaatgatgtcactgct
gtcagtggagttaatttaagggaagaagaagaacagctattttctgggtccaaggaggac
agtcgagtttcagaagcatctcggagggttgtacaggaagaagaagaaaggctgatattg
cagaaaactccactgcagaaaaaattggcagagattatggtcaaatgtggtttgaagaat
atcaacaacgatgtggagagatgcctgtccttgtgcgttgaggaaagaatgcgtgggtta
ataagtaccctgatcaggctatcaaagcagcgcgttgatgctgagaaatctagacatcgg
actgtaattacctcagatgttcgacaacaaattatgacaatgaaccagaaagctagggaa
gaatgggagagaaagcaggctgaagcagagaagctccgaaaagttaatgaacctgagggt
gacaatggagtagaaggggacaaggagaaagatgatggtcgtgtgaaagcaattaaggga
aatatcccggcaaacaaggaagaggatgacaaaatgagaacaactgctgcaaatgttgct
gcccgagcagctgttggtggagatgaccatctatcaaaatggcaactcatggctgagcaa
gcccgccagaaacgtgaaggtgggatagaggcggcatcaggttcctactcagctaaagaa
gttacccgcaagcctcaatttacatctggaaaaagtatgaaggataatcaggaacctgaa
aagaggagccctgcggctgcatccacaggggtaaggaaggttggaaggaaccaagcattt
acgccacaaagtaaggtggcccgttccatttctgttaaggatgtaattgcagcgttggaa
agagaaccacagatgtcaaagtctacactgatttatagattgtatgagagagtgcagtct
gatgctccaacagaatag
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