Teichococcus cervicalis: PFY06_10345
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Entry
PFY06_10345 CDS
T08750
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rcv
Teichococcus cervicalis
Pathway
rcv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFY06_10345 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcv03019
]
PFY06_10345 (rnr)
03016 Transfer RNA biogenesis [BR:
rcv03016
]
PFY06_10345 (rnr)
Enzymes [BR:
rcv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PFY06_10345 (rnr)
Messenger RNA biogenesis [BR:
rcv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PFY06_10345 (rnr)
Transfer RNA biogenesis [BR:
rcv03016
]
Prokaryotic type
tRNA degradation factors
PFY06_10345 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
WBV41640
LinkDB
All DBs
Position
2185452..2187662
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AA seq
736 aa
AA seq
DB search
MPSRDALRRFLREVSGRVGKTEISRHFGLTTDQRPALRALLKELEQEGTLLRATGRQIRH
SDTLPEMAPVEVFGISPDGEPMARPLDWQGQGRPPLVLMRPERPGQPALAPGDRVMARLK
PISPFRYEGRSFKRLGRSDTGRILGVYQEGRLQPTDRRQKAEWSVAPEDAAGAEPGELVL
AEPLPGRPFGLQPARVVERLGPMDAAGAVSILCIHAHRIPDAFPPEAVAEAEAAAPVGLA
GREDLRALRLVTIDGEDARDFDDAVWAAPEGSGWRVVVAIADVAHYVRPDTALDRAAWGR
GNSVYFPDRVVPMLPEALSNGLCSLRPGEERGCLFVEMRFDAHGQKLGHRFGRGLMRSLA
RLTYEQVQAARDHGAPPDLPGEEITQLYGAFAALHAARQKRGTLDLDLPERRVLLDPDGQ
LRDVLPRQRLDSHRLIEEFMVAANVCAAEELERLAQPLLYRVHDRPSDAKLEGLRQFLDS
FDLDLPAAGELRPIHFARLLERMEGRPEARLLHETVLRAQSQAAYAPENIGHFGLALARY
AHFTSPIRRYADLVVHRALIRGLKLGPDGLTEAEIARLPDTGEHITRTERRAAAAEREAV
ERYLTLHMASRVGSMFAARISGVTRFGLFVTVEENGAGGLVPLSSLPDDQWIFEEAERRL
SGRYTRLAFTLGQEVELRLADAMPLTGGLVFELLQGAPPPGARRSRVRRIAPGKDKGQGQ
GTAKGAAHAGRGSTAR
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgccctcgcgcgacgcgctgcggcgcttcctgcgggaggtgtccggccgtgtcggcaag
accgagatctcccgccatttcggcctgaccaccgaccagcgccctgccctgcgggcgttg
ctgaaggagctggagcaggagggcaccctgctgcgcgccaccggccggcagatccggcac
agcgacaccctgccggagatggcaccggtcgaggtgttcggcatcagcccggatggcgaa
ccgatggcacggccgctggactggcagggccagggccgcccgccgctcgtgctgatgcgg
cccgagcgcccgggtcagccggccctggccccgggcgaccgggtgatggcgcggctgaag
ccgatcagcccctttcgctacgagggacgcagcttcaagcgccttggccggtccgacacg
gggcgcatcctgggggtctaccaggagggtcgcctgcagccgaccgaccgccgccagaag
gccgagtggagcgtggcgcccgaggacgccgccggcgccgagccgggcgagctggtgctg
gccgagcccctgcccggccgccccttcggcctgcagcccgcccgcgtcgtagagcggctg
ggtccgatggacgcggcaggcgccgtctccatcctctgcatccatgcgcaccgcatcccc
gatgccttcccgcccgaggccgtggcagaggccgaggccgccgcaccggtcgggctggcg
gggcgggaggatctgcgcgccctgcgcctcgtcaccatcgatggcgaggatgcgcgggat
ttcgacgatgccgtctgggcggcgcccgagggcagtggctggcgggtggtggtcgccatc
gccgatgtggcgcattacgtccgccccgacaccgcgctggaccgcgccgcctggggccgc
ggcaacagtgtctatttccccgaccgtgtcgtgccgatgctgcccgaggcgctgtccaac
gggctgtgcagcctgcgcccgggcgaggagcgcggctgcctcttcgtcgagatgcgcttc
gatgcccacgggcagaaactcggccaccgcttcggccgcgggctgatgcggtcgctggcg
cgcctgacctatgagcaggtgcaggcggcgcgcgaccatggcgccccgccggacctgccg
ggcgaggagatcacgcaactctacggcgccttcgccgccctgcatgcggcgcgacagaaa
cgcggcacactggatctcgacctgccggagcggcgtgtgctgctggacccggacggccag
ctgcgcgacgtgctgccgcgccagcgcctcgattcccaccggctgatcgaggagttcatg
gtcgccgccaatgtctgcgcggcggaggagctggagcggctggcccagcctctgctctac
cgcgtgcatgaccgcccctcggacgccaagctggaggggctgcggcagttcctcgattcc
ttcgatctcgacctgccggcggcgggggagctgcggccgattcatttcgccaggctgctg
gagcggatggagggccggccggaggcgcggctgctgcacgagacggtgctgcgcgcccag
tcgcaggccgcctatgcgcccgagaatatcggccatttcggcctggcgctggcgcgctac
gcgcatttcaccagcccgatccgccgctacgccgatctggtcgtgcaccgggcgctgatc
cgcggcctgaagctcggccccgatgggctcaccgaggcggagatcgcccgcctgcccgac
acgggcgagcacatcacccgcaccgagcgccgcgccgcggcggcggagcgcgaagcggtg
gagcgctatctgacgctgcacatggcgtcccgcgtcggcagcatgttcgctgcgcgcatt
tcgggggtgacacgcttcggtctgttcgtcacggttgaggagaatggcgcgggcggtctc
gtgccattgtcatccctgccggacgatcaatggattttcgaggaagccgaaagacggctt
tccggtcgctacacgcgccttgccttcaccctggggcaggaggtggagctgcgcctggcc
gacgccatgccgctgacgggcgggctggtcttcgaactgctgcagggcgcgccgccaccg
ggcgcgcggcgcagccgggtacggcgcatcgcgcccggcaaggacaagggccagggccag
ggcacagccaagggggccgcgcatgccgggcgcggcagcacggcgcgctag
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