Roseobacter denitrificans: RD1_0090
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Entry
RD1_0090 CDS
T00376
Symbol
dapE
Name
(GenBank) succinyl-diaminopimelate desuccinylase
KO
K01439
succinyl-diaminopimelate desuccinylase [EC:
3.5.1.18
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00300
Lysine biosynthesis
rde01100
Metabolic pathways
rde01120
Microbial metabolism in diverse environments
rde01230
Biosynthesis of amino acids
Module
rde_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RD1_0090 (dapE)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rde01002
]
RD1_0090 (dapE)
Enzymes [BR:
rde01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.18 succinyl-diaminopimelate desuccinylase
RD1_0090 (dapE)
Peptidases and inhibitors [BR:
rde01002
]
Metallo peptidases
Family M20
RD1_0090 (dapE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M20
M20_dimer
Peptidase_M28
ECR1_N
Motif
Other DBs
NCBI-ProteinID:
ABG29826
RoseoBase:
RD1_0090
UniProt:
Q16DW7
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All DBs
Position
92563..93852
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AA seq
429 aa
AA seq
DB search
MQPDLAAAIENRRDDLIALTQALIRIPTLNPPGCEYHTICQLIASRLEARGFAIEMIRAR
GTPGDSDTYPRWNVVARHDGATQGECVHFNSHIDVVEVGQGWTHDPFAGTLQDGRIYGRG
ACDMKGGLAASIIAVEAFIDTYPDYAGAIEISGTADEESGGYGGVAYLAERGYFDPQRVQ
HAIIPEPLNKDRICLGHRGGWWAEIETHGEIAHGSMPFLGDCAVRHMGAVLSEFEDKLFP
AMALRRTDMPVVPDGARQSTMNINSIHGGQAEQDADFDGLPAHCVPDSCRIVIDRRFLLE
EPLDQVRAEVTGLLETLKQTRPDFEYTLTEINSVLPSMTDRDAPIVRVVAQAIEEVIGNP
PDYVASPGTYDQKHIDRIGKLKNCIAYGPGILELAHKPDEYVGVDDMIDSAQVMAQSLVT
LLTGKAQSV
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccagacctcgccgcagccatagaaaacagacgagacgacctgatcgccctcacg
caggcgctgatccggatcccgacgctgaacccgccgggctgtgagtatcacacaatctgc
cagttgatcgcatcccgtcttgaggcgcgcggctttgccatcgagatgatccgcgccagg
gggacacccggcgacagtgacacatacccaaggtggaacgttgtagcccggcatgatggg
gccacacagggtgaatgcgtgcattttaacagccatatcgacgtggtcgaggtggggcag
ggctggacccatgacccctttgccggcacgctgcaggatggtcggatttatggccgcggt
gcttgtgacatgaagggggggcttgctgcgtcgatcatcgcggttgaagccttcatcgac
acctaccccgattacgccggtgccatcgaaatttcaggcacggcggatgaggaatcgggt
ggatatggcggtgtcgcctatcttgcagagcgggggtatttcgacccgcagcgtgtgcag
catgcgatcatcccggaacctttgaacaaggaccgcatctgccttgggcaccggggcggc
tggtgggcagagatcgaaacccatggtgaaattgcgcatggctccatgcctttcctgggc
gattgtgccgtgcgccatatgggtgcggtgctgtctgaattcgaagacaagctgttcccc
gccatggccctgcgtcgcaccgatatgcccgttgtgcccgatggcgcgcggcaatccacg
atgaacatcaattcgatccatggcggacaggccgaacaggatgccgattttgacgggctg
cccgcgcattgcgtaccggacagttgccgcatcgtgattgaccgccgtttcctgctggaa
gaaccgctggatcaggtccgtgccgaagtcaccggcctgcttgaaacccttaaacaaaca
cgcccggatttcgaatatacgctgaccgagatcaattctgtgctgccctcgatgaccgac
cgggacgcgccgattgttcgcgttgtggcacaggccatcgaagaggtgatcggcaacccc
ccggactacgtggcctcccccggcacctatgatcagaaacacatcgaccggatcggcaag
ctgaaaaactgtatcgcctatgggccgggtattctggagcttgcgcataagccggatgaa
tatgtcggcgtcgatgacatgatcgacagcgcgcaggtgatggcgcaatcgctggtcaca
ctgttgacgggcaaggcccagagcgtctga
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