Roseobacter denitrificans: RD1_0280
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Entry
RD1_0280 CDS
T00376
Symbol
potD
Name
(GenBank) spermidine/putrescine-binding periplasmic protein, putative
KO
K11069
spermidine/putrescine transport system substrate-binding protein
Organism
rde
Roseobacter denitrificans
Pathway
rde02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
RD1_0280 (potD)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rde02000
]
RD1_0280 (potD)
Transporters [BR:
rde02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Spermidine/putrescine transporter
RD1_0280 (potD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_8
SBP_bac_1
DUF7090
TAT_signal
Motif
Other DBs
NCBI-ProteinID:
ABG30005
RoseoBase:
RD1_0280
UniProt:
Q16DD8
LinkDB
All DBs
Position
complement(272377..273483)
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AA seq
368 aa
AA seq
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MTKLIYDRRRFLGTAAMTGVALASPAYLRRASASGGEVNIWTYNDFVPAAFKDQFEAETG
IKVNVRLVDDQGKQFNLLAAEAPNPTVDIMTVAGHRFLQFIDSELLAPLDTDRLANWGNI
NPTFSESDWATINGNKWGAPILSGMEVLSYNTELVSPEEVTSWDALFSEKFKGQTAYIIQ
DMMSIIMLKMGYDGNMVAYMDDPEKAAAIVEEAKQFLIEHKPLVRKYYDSGAEIQQMFVN
QDIALGHSWNGPAAALINDGFPLAMTIPEEGSYGFVYTYNIANNAPNVDNAYTFINAILA
SPEIGAAMTRASGFISTYKDASNYLTDLEKKSTAFPDEELARLQFFRAEANKMKYELVDP
AVEAIKAA
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaactgatttacgaccgccgccgctttctgggcactgctgcgatgacgggtgtg
gcgcttgccagcccggcgtatctgcgccgtgcctccgcttcgggcggggaggtcaacatc
tggacctataacgattttgtgcccgccgccttcaaggatcagttcgaggctgaaaccggc
atcaaggtgaacgtgcgcctcgtggacgatcagggcaagcagttcaacttgctggccgcc
gaagccccgaacccgaccgtcgatatcatgacggttgccgggcaccgcttcctgcagttc
attgacagcgaattgctggcaccgctggataccgaccgtctggcgaattggggcaacatc
aacccgacgttctccgaaagtgactgggcgacgatcaatggaaacaaatggggtgcgccg
atcctgtcgggcatggaagttctgtcctacaacaccgagctggtgagccctgaggaagtc
acaagctgggacgcgctgttctccgaaaagttcaagggccaaaccgcctatatcattcag
gatatgatgtcgatcatcatgctcaagatgggctatgacggcaatatggtcgcttatatg
gacgatccggaaaaagccgccgccatcgtcgaggaggccaagcaattcctgatcgagcat
aaaccgctggtgcgcaaatactatgacagcggtgccgaaattcagcagatgttcgtcaat
caggacatcgcgcttggtcatagctggaacggccctgcggcggccttgatcaacgatggc
ttcccgctggccatgaccattcccgaggaagggtcctatggctttgtctatacctacaac
atcgccaacaacgcgccgaatgtggacaacgcctatacgttcatcaacgccatcctcgcc
tcgcccgagattggcgcggcgatgacaagggcatctggctttatctcgacctacaaggat
gcgtccaactacctgacggatctggaaaagaaatccaccgctttcccggatgaggaactg
gccagattgcagttcttccgcgccgaggccaacaagatgaaatacgaactggttgatccg
gccgtcgaagcgatcaaagccgcctga
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