Roseobacter denitrificans: RD1_0293
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Entry
RD1_0293 CDS
T00376
Name
(GenBank) 3-deoxy-D-manno-octulosonic-acid
KO
K02527
3-deoxy-D-manno-octulosonic-acid transferase [EC:
2.4.99.12
2.4.99.13
2.4.99.14
2.4.99.15
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00540
Lipopolysaccharide biosynthesis
rde01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
RD1_0293
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
rde01005
]
RD1_0293
Enzymes [BR:
rde01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.99 Transferring other glycosyl groups
2.4.99.12 lipid IVA 3-deoxy-D-manno-octulosonic acid transferase
RD1_0293
2.4.99.13 (Kdo)-lipid IVA 3-deoxy-D-manno-octulosonic acid transferase
RD1_0293
2.4.99.14 (Kdo)2-lipid IVA (2-8) 3-deoxy-D-manno-octulosonic acid transferase
RD1_0293
2.4.99.15 (Kdo)3-lipid IVA (2-4) 3-deoxy-D-manno-octulosonic acid transferase
RD1_0293
Lipopolysaccharide biosynthesis proteins [BR:
rde01005
]
Lipid A
RD1_0293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glycos_transf_N
Glyco_trans_1_2
Motif
Other DBs
NCBI-ProteinID:
ABG30018
RoseoBase:
RD1_0293
UniProt:
Q16DC5
LinkDB
All DBs
Position
284974..286221
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AA seq
415 aa
AA seq
DB search
MARSIGLTAYRALSKRSTERAYKPRGKRPRGTLVWIHAGEPQNMLAVQDLAQRLCNTRFG
VHVLITLPDPASYEETLQSWVPHDLIQIEQVPSEHPHAVTSFWRHWMPEVAIWAWGGLRP
NLVDQVHQSGCPIALIDADAAGFDGKRERWLPELSRQLLEPFVAIMVRSNAAVQKLQTLG
IESARIDRKPPLQAGGNALACRDSDLADLTETLRGRPVWLANNIQEEELPVILQAHRQSL
RLSHRLLLVLHPAHGGLSDGFAEKIATDDLRHADWTAGEDPDDASQVLLTEDHGDLGLFY
RVAPVTFMGSSLVSGYSGRNPFEAAALGSAVLYGPHVSRFMPFYSRLAKAGAARIVKDVE
TLGAAVTQLIAPDQAAAMAHAGWDVVSEGADVTDRVIDLVQAALDGELETAHARA
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggcccgttccatcgggctgacggcctatcgtgctctgtccaaacgttcaaccgagcgg
gcgtacaagccgcgtggaaaacggccgcgtggtacgctggtttggatacacgcgggtgag
ccgcagaacatgctggcggttcaggatctcgcacagcggttgtgtaacacgcgctttggg
gtgcatgttctgatcacgctgcctgaccccgcatcctacgaggaaaccctgcaaagctgg
gtgccccacgatctgatccagattgaacaggtcccgagtgaacacccgcatgcggtcaca
tccttttggcggcactggatgccggaggttgcgatctgggcatggggtggtctgcggcca
aatctggtggaccaggtgcatcagtccggatgcccgatcgcattgattgatgcggatgcg
gccgggtttgacggcaagcgcgagcgatggctgccggaactgtcgcgccaattgctcgaa
ccctttgtcgccatcatggtccgctcaaacgccgctgtccagaaattgcaaacactgggg
atcgagagtgcgcggatcgacagaaaaccccccttgcaggcgggtggaaatgcgttggct
tgccgcgactcggatctggcggatttgaccgaaaccctgcgcggtcgacccgtgtggctg
gccaataacattcaggaagaagaattgcccgtcatcctgcaagcccatcgccagtcgctc
agactgtcgcaccgtttgctgctggtgctgcacccggcccatggggggctgtccgatggt
tttgccgagaaaatcgcaacggatgacctgcggcatgcggattggaccgcaggagaggac
ccggatgacgccagccaggttttactgaccgaagatcacggcgatcttggtctgttttac
cgcgtcgcacctgtgaccttcatgggcagttccctcgtttcgggctatagcgggcgcaat
ccgttcgaagcggccgcgcttgggtcagcggttctgtatggcccgcatgtcagccgcttc
atgccgttttattcacggctggccaaggcgggcgcggcgcgcatcgttaaggatgtcgaa
acactgggtgccgctgtcacccaactcatagcgcctgatcaggccgctgccatggcgcac
gcaggctgggatgtcgtcagcgaaggtgcagatgtgacggaccgcgtcattgatttggtg
caggccgcactggacggggaattggagaccgcacatgcgcgcgcctga
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