Roseobacter denitrificans: RD1_0402
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Entry
RD1_0402 CDS
T00376
Name
(GenBank) ErfK/YbiS/YcfS/YnhG family protein
KO
K16291
L,D-transpeptidase ErfK/SrfK
Organism
rde
Roseobacter denitrificans
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rde01002
]
RD1_0402
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rde01011
]
RD1_0402
Peptidases and inhibitors [BR:
rde01002
]
Cysteine peptidases
Family C82
RD1_0402
Peptidoglycan biosynthesis and degradation proteins [BR:
rde01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
RD1_0402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Motif
Other DBs
NCBI-ProteinID:
ABG30118
RoseoBase:
RD1_0402
UniProt:
Q16D25
LinkDB
All DBs
Position
complement(391673..392284)
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AA seq
203 aa
AA seq
DB search
MSEQNFKNPGRRAFLAGGAALLASPAIAQDLGSVNSAGTTQGERDLTETVRRNISSFRTL
DWQPYFSDLRRGAILVDIDSRALHYWAEGGDFYKLYPSSVPLSEELTRRGRTKIVRKVEG
PSWRPTPSMLERNPDWPEFIGPGPDNPMGTHALYLSWTYYRIHGTHDTRKIGRQSSNGCI
GLFNEHIAELYELSEVGTQVLLI
NT seq
612 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacagaacttcaaaaaccccggacgccgggcgttcctcgcgggcggtgctgcc
ttgctcgcgtctccggcgatcgcgcaggaccttgggtcagtcaattcagcgggcaccacg
caaggagagcgggacctgacggaaaccgtgcgccgtaatatatcgagtttccggaccctt
gactggcaaccttatttctctgatctgcgaaggggcgccatccttgtggatatcgacagc
cgcgcgttgcactattgggcggaaggcggagatttctacaaactctacccctcaagcgtg
cccctgtccgaagaattgactcgccgcggccgtaccaagatcgtgcgcaaggtcgaaggc
ccaagctggcgtccgacgccgtccatgctggaacgcaaccccgactggcccgaattcatc
ggccccgggcctgacaaccccatgggcacgcatgcgctctacctcagctggacctactac
cggattcacggcacgcatgacacacgcaaaatcggtcgtcagtcgtcaaacggatgcatc
gggcttttcaacgaacacattgccgagctttatgaactgtccgaagttggtacacaggtg
ttgctaatttga
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