Roseobacter denitrificans: RD1_0433
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Entry
RD1_0433 CDS
T00376
Symbol
trmE
Name
(GenBank) tRNA modification GTPase TrmE, putative
KO
K03650
tRNA modification GTPase [EC:3.6.-.-]
Organism
rde
Roseobacter denitrificans
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rde03016
]
RD1_0433 (trmE)
Transfer RNA biogenesis [BR:
rde03016
]
Eukaryotic type
tRNA modification factors
Other tRNA modification factors
RD1_0433 (trmE)
Prokaryotic type
Methyltransferases
RD1_0433 (trmE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MnmE_helical
TrmE_N
MMR_HSR1
Dynamin_N
FeoB_N
ABC_tran
AAA_28
RsgA_GTPase
LpxI_N
AAA_29
TniB
Arf
AAA_18
Motif
Other DBs
NCBI-ProteinID:
ABG30148
RoseoBase:
RD1_0433
UniProt:
Q16CZ5
LinkDB
All DBs
Position
complement(423855..425141)
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AA seq
428 aa
AA seq
DB search
MDTVFALGSAQGRAGVSVIRLSGPAAWAVAETICGSLPDPRKSAVRVLRAQDGSVIDQAL
VLAFKAPHSFTGEDVVEFHVHGSIAVVRTVLDALSDQDVARLAEAGEFTRRALENGKLDL
SQVEGLADLIDAETEAQRRQAVRVLTGALGEKVEVWRSKLIRAAALIEATIDFADEDVPV
DVTPEVTSLLEDVSSDVRTEVAGTHVAERIRSGFEIALVGAPNAGKSTLLNKLAGRDAAI
TSEIAGTTRDVIEVRMDLGGLPVTFLDTAGLRQSADEIETIGIERAIKRAQEADLRVFLS
GPDERLLIEPLEDDIRLTPKVDLAPGSQTGISGKTGQGIPELLEKIRSVFSERVSAVGLA
THERHRLAMQRALEDLDNSFEALLRGPEFYDITAQELRSAIRALETLVGRIDAENLLDEI
FSSFCLGK
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggatacagtctttgcactaggatctgcacaggggcgtgcgggtgtctccgttattcgc
ctgtccgggcctgccgcctgggcggttgcagaaacgatctgcgggtctctgccagatcca
cgtaaatccgctgttcgggtgctcagggcgcaagatggttcggtcattgatcaggcactc
gtgcttgcgttcaaagcgccccatagctttaccggcgaagacgtggtggaatttcacgtt
cacggcagcattgcagtggtgcgtaccgtcctcgatgcgttgtcggatcaagatgtggcc
agattggcagaggctggagagttcacacggcgtgcactggaaaacggcaagctcgatctg
tcgcaggttgaggggctggccgatctgattgatgcggagacagaggcacaacgcaggcag
gctgtgcgcgtgctgacaggtgccttgggcgaaaaagttgaggtgtggcgatcaaagctg
atccgtgcagcggcattgattgaggcgacgatagattttgcggatgaggacgtaccggtt
gatgttacaccggaagttacgtcgctgttggaagatgtgtcatctgatgtacgaaccgag
gttgccggaacacatgttgcggagcgtattcggtcggggttcgaaattgcgttggttgga
gcgccaaatgcgggtaagtctacgctgttaaacaaactggctggtcgagacgctgcaatt
acgtccgaaatcgcgggcacaacgagggatgtgatagaagtcaggatggatctgggtggg
ttgcctgtgacatttcttgatacggcaggattgcgtcagagcgctgatgagatcgaaacg
attggcattgaacgtgcgataaagcgggcccaggaagcagacttgcgcgtgtttttgtcc
ggcccggacgaaagactgctgatagaacctcttgaagacgacatccggttaacaccaaag
gttgatcttgcgccgggatcgcagacgggtatttcaggaaagaccgggcagggcattcca
gagttgctggaaaaaatcagatctgttttttcagaacgtgtgtcagctgtgggattggca
acgcacgagcgacatcggctcgccatgcagcgcgctttggaagatctggataattcattt
gaagctcttctcaggggtccggagttttatgatataaccgcgcaggaactcaggtcagcg
attcgagcgcttgaaacgcttgttggtcgtattgatgcagaaaatctgctggatgaaatc
ttttcaagtttttgccttggaaaataa
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