Roseobacter denitrificans: RD1_0546
Help
Entry
RD1_0546 CDS
T00376
Symbol
fadD
Name
(GenBank) long-chain-fatty-acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00061
Fatty acid biosynthesis
rde00071
Fatty acid degradation
rde01100
Metabolic pathways
rde01212
Fatty acid metabolism
rde02024
Quorum sensing
rde04146
Peroxisome
Module
rde_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
RD1_0546 (fadD)
00071 Fatty acid degradation
RD1_0546 (fadD)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
RD1_0546 (fadD)
09145 Cellular community - prokaryotes
02024 Quorum sensing
RD1_0546 (fadD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
rde01004
]
RD1_0546 (fadD)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rde04147
]
RD1_0546 (fadD)
Enzymes [BR:
rde01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
RD1_0546 (fadD)
Lipid biosynthesis proteins [BR:
rde01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
RD1_0546 (fadD)
Exosome [BR:
rde04147
]
Exosomal proteins
Exosomal proteins of breast milk
RD1_0546 (fadD)
Exosomal proteins of breast cancer cells
RD1_0546 (fadD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
CBFD_NFYB_HMF
DUF412
Motif
Other DBs
NCBI-ProteinID:
ABG30251
RoseoBase:
RD1_0546
UniProt:
Q16CP2
LinkDB
All DBs
Position
529666..531387
Genome browser
AA seq
573 aa
AA seq
DB search
MTAQERPWTAFYGVGVRPDLPEASYRTIGDLVHSVANTYGKAPAFTACMPNGMNGTLTFE
QVDQMSDAFAVYLREVAGLQQGDRVALQMPNCLSFPIAAFGILKAGCVLVNVNPLYTADE
MAKQFVDAEPHALIIVDMFADKIPQATRGHPIPNIIVTRVAEFLPTLPKWIIGLVQKHWD
KSVKAIEVPHIRLPDAIAAGRVHMQSEKIEVYAYRRNVQPDDIACLQYTGGTTGVAKGAM
LTHANLIMNMEQVMELISGVEKGKEVALTALPMYHIFAFTVNLLGFYWLGARNILIPNPR
PLVSLKRAMENYKITWMSGVNTLFNGLTNEVWFTDSPPKHLKFASAGGMALQTAVEERWQ
EITGKPVVQGYGLTETSPALTFEPLGKKRSGTIGVPVPSTLVACLDEYGHEVPVGQSGEI
AAKGPQIMAGYWNKPEETAAVMKDGWFLTGDIGVMDADGYFTIVDRKKDMVVVSGFNVYP
NEIEECLATHPAIVEAAVIGVPDDATGEAVKAFVVKRDPSLSEAEVRAHCKAHLTAYKIP
KRVEFRDELPKSNVGKILRKDLRASEIAHQAQE
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgcaggagcggccatggacggcattttatggtgtgggcgtgcgtccggacctg
cccgaggcatcttaccgaaccattggcgatctggtgcattccgtcgccaatacctatggc
aaggccccggccttcaccgcctgcatgcccaatggcatgaatggaacgctgacgtttgag
caggtggaccagatgtccgatgcctttgcggtgtacctgcgcgaggttgccgggttgcag
cagggcgatcgcgtcgcgttgcagatgcccaattgcctcagctttccaatcgctgccttt
gggattctcaaagctgggtgcgttctggtcaatgtgaacccgctgtacacagcggacgag
atggcaaaacaattcgtggacgcagaaccccacgccctgatcatcgtggacatgttcgcc
gacaaaatcccgcaagcgacgcgcggtcatccgatcccgaatatcattgtcacgcgtgtc
gcggagtttttgccgaccctgccaaagtggatcatcgggctggtgcaaaagcactgggac
aaatcggtgaaagccattgaggtgccgcatatccgcctgcctgatgcgattgcggcgggt
cgggtgcatatgcagtccgaaaagatcgaggtttatgcctatcggcgcaatgtgcagcct
gatgacatcgcctgcctgcaatacaccggtggcacaaccggcgtggcaaagggcgcgatg
ctgacccatgcaaatctgatcatgaacatggaacaggtgatggagctgatctccggcgtg
gagaagggcaaagaggtcgccctgacagccctgccgatgtatcatatctttgccttcacg
gtgaatttgctcgggttctactggctgggcgcgcgcaacatcctgatcccgaacccgcgt
cctctggtcagcctgaaacgcgcgatggagaattacaagatcacgtggatgagcggtgtg
aacaccctgttcaacggcttgacgaatgaggtctggttcacggacagcccgcccaaacat
ctgaaattcgcctctgctggcggtatggcgctgcaaacggcggttgaagaacgctggcag
gagattaccggaaaaccagtggttcagggctatggcctgaccgaaacatcacccgcgctg
accttcgaacctttgggtaaaaagcgcagtggcaccatcggcgtgcctgtgccgtccacc
ttggtggcctgtctggatgagtatggccacgaggtccccgtcggccaatccggagagatt
gcagcaaaggggccgcagatcatggccggctattggaacaagcccgaagaaaccgcggcg
gtgatgaaagacggctggttcctgaccggcgacatcggcgtcatggatgcggatggctat
ttcaccatcgtagaccgcaaaaaggacatggtggtggtgtccggtttcaacgtctacccc
aatgagatcgaggaatgcctcgcaacccaccctgcgattgtcgaggcggcggtgatcggt
gtgccagatgacgcaaccggggaggcggtcaaagcctttgtcgtcaaacgcgacccaagc
ctgtcggaggcggaggtgcgtgcccattgcaaggcgcatctgaccgcctataaaatcccc
aaacgtgttgagttccgcgatgagctgccgaaatccaacgtcgggaaaatcctcagaaaa
gacctgcgcgcaagcgaaatcgcgcatcaggcgcaggagtaa
DBGET
integrated database retrieval system
