Roseobacter denitrificans: RD1_0594
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Entry
RD1_0594 CDS
T00376
Name
(GenBank) ABC transporter, ATP-binding permease protein, putative
KO
K12541
ATP-binding cassette, subfamily C, bacterial LapB
Organism
rde
Roseobacter denitrificans
Pathway
rde02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
RD1_0594
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rde02000
]
RD1_0594
02044 Secretion system [BR:
rde02044
]
RD1_0594
Transporters [BR:
rde02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC-BAC subgroup
RD1_0594
Secretion system [BR:
rde02044
]
Type I secretion system
Adhesin protein transporter
RD1_0594
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
AAA_16
AAA_29
SMC_N
Motif
Other DBs
NCBI-ProteinID:
ABG30295
RoseoBase:
RD1_0594
UniProt:
Q16CJ8
LinkDB
All DBs
Position
complement(574936..576594)
Genome browser
AA seq
552 aa
AA seq
DB search
MERGLDLRRLRRNPHVVVASLCANVLGLALPLAMIHVYDRIIPREGYATLAVLAAGLATA
ALADFMIRMARGRLMAAASNRFETEAYHRAFRNLLATGTRLRDASPGVLHDHVESIERVR
KHHASEAASAMLDLPFIVLFIAVMALISPVLGISVCILALLSMGIVWFQRRKILELNTFR
QSRDQQRHSFLMEAIDGVEMIKSLGIEDLMQRRYERLMSVNAAITHDLSRRVTLTQGITS
AIGLMAPVLMAGVGSFLVIDGQMSVGGVAASVLLTGRVIQPMLRIEALLAGEADVKRSEK
QAHELLQADTAASGTRKIDRIDSIVFSNVTIARHPDKKPLFENISLQLQRGDCVLLTGAD
GCGRSTLLSVMAGRARPTSGTVRINGLASDDIDQEILCDRISTLSPDYTMLDGTLLENLT
AFDVPRHQKQAFKLAEELGISSFISHHSDGLSLQVAARNANSLPKAIHDGIVLISGLVRC
PDVILFDEANVGLDRNIDQNMLQALRRRIPEAIIVIVTHRPSYMALANRVLQIRDGRLIE
GEVIPSERTMAG
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggaacgtggattggacttacgtcgtctgcgacgcaacccacatgttgtagtcgcctct
ttatgcgcaaatgtgctgggtcttgcgctgcctttggcgatgattcacgtatatgaccgg
atcattcccagagaaggttatgcgacgctggctgtattggccgcaggccttgcgacggcg
gcactcgccgacttcatgatccgtatggcgcgtggcaggttgatggccgccgccagcaac
cggttcgagactgaggcctatcaccgcgctttccgcaatcttcttgccacgggtacgcgc
ctgagggatgccagtccgggcgtgctgcacgaccatgtggaaagcatcgagcgggtgcgc
aaacaccatgcgagtgaagcagcctccgcaatgctcgatctgccgttcattgtgcttttc
atcgcagtgatggctctgatttcgcctgttctgggtataagtgtttgtatacttgcgctt
ttgtccatgggcatcgtctggtttcagcggcgcaagatcctggagctcaatactttccga
caaagcagagaccaacaacgccactctttcctgatggaggcaattgacggcgtagagatg
atcaagagcctcgggatcgaggatttgatgcaacgccgttatgagcgactgatgtcagtc
aatgcagcgatcacgcatgatctgagccgtcgcgtgacgctcacccaggggattacatcc
gcgatcgggctgatggcccccgtccttatggcgggagtcggatcgtttctggtcatagac
ggccaaatgtctgttggcggggtcgcggcctcagttctgctcaccgggcgtgtcatacag
ccaatgctgcgcattgaggcgctgctggctggtgaggcggatgtcaaaagatcggaaaaa
caagctcatgaactcttgcaggcagatacggctgcttccggcaccagaaaaatagataga
attgacagcatcgtcttcagcaatgttacaattgcgcgacatccggacaagaagccactg
tttgaaaacatctcgctccaattgcagcgcggcgactgcgttttactgacaggcgctgat
ggatgtgggcgtagcactctgttgtcagtcatggccggcagggcccgccccacttccggc
acggtgcgcatcaacggcttggcgagcgatgatatcgatcaggaaattctctgcgaccgg
atcagcaccttgtctcctgactacacgatgcttgacggaaccttgctggaaaacctcacc
gcatttgatgtgccccgacaccagaagcaagccttcaaacttgcggaagaacttggaata
tcaagtttcatttcgcatcactctgacggcctgtcgctacaggtcgcggcgcgcaatgcc
aacagcttgcccaaagcgatccatgatggaatcgttctgatttcaggcttggtgcgctgt
cccgatgttatcctttttgatgaggcgaatgtgggtctggacagaaacatcgaccaaaac
atgttacaggcgctgcggcgccgaataccggaggcaattatcgtgattgtcacccacaga
ccgtcctacatggctttggcgaaccgcgtcctgcagatcagagacggccgcctcattgaa
ggcgaagtcataccgtcagagaggacaatggccggatga
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