Roseobacter denitrificans: RD1_0603
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Entry
RD1_0603 CDS
T00376
Symbol
hup
Name
(GenBank) DNA-binding protein HU
KO
K03530
DNA-binding protein HU-beta
Organism
rde
Roseobacter denitrificans
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rde03032
]
RD1_0603 (hup)
03036 Chromosome and associated proteins [BR:
rde03036
]
RD1_0603 (hup)
03400 DNA repair and recombination proteins [BR:
rde03400
]
RD1_0603 (hup)
DNA replication proteins [BR:
rde03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
RD1_0603 (hup)
Chromosome and associated proteins [BR:
rde03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
RD1_0603 (hup)
DNA repair and recombination proteins [BR:
rde03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
RD1_0603 (hup)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-CCDC81_euk_2
HU-CCDC81_bac_2
DUF2267
Motif
Other DBs
NCBI-ProteinID:
ABG30303
RoseoBase:
RD1_0603
UniProt:
Q16CJ0
LinkDB
All DBs
Position
complement(583987..584274)
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AA seq
95 aa
AA seq
DB search
MAKPMTKTQLVAALAEEMDTDKKSAGAALDAVCNLITKEVSGGGAVTLPGVGKIYCRERP
ERMVRNPATGEQFKKDADKVVKMTIAKALKDSVNG
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccaatgacaaagacccaactcgttgccgcactggcagaagagatggacaca
gacaagaaatctgcaggcgcagcactggacgcagtttgcaacctcatcactaaagaagtg
tccggcggtggtgctgtgacgctgcccggtgtcggcaagatctactgccgcgagcgcccg
gagcgtatggttcgcaacccggcaaccggcgaacagttcaagaaagacgctgacaaggtg
gtcaagatgaccattgcaaaagcgctcaaagacagtgtgaacggctaa
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