Roseobacter denitrificans: RD1_0637
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Entry
RD1_0637 CDS
T00376
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rde
Roseobacter denitrificans
Pathway
rde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RD1_0637 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rde03019
]
RD1_0637 (pnp)
03016 Transfer RNA biogenesis [BR:
rde03016
]
RD1_0637 (pnp)
Enzymes [BR:
rde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RD1_0637 (pnp)
Messenger RNA biogenesis [BR:
rde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RD1_0637 (pnp)
Transfer RNA biogenesis [BR:
rde03016
]
Prokaryotic type
tRNA degradation factors
RD1_0637 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
LTXXQ
Motif
Other DBs
NCBI-ProteinID:
ABG30337
RoseoBase:
RD1_0637
UniProt:
Q16CF6
LinkDB
All DBs
Position
complement(618906..621041)
Genome browser
AA seq
711 aa
AA seq
DB search
MFNETKKSIEWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKKQKPGQDFFPLT
VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPLRPLFVPGFKNEVLVMCTVLSH
DLVNDPDMVAMIAASAALTISGAPFMGPIAGARVGFEDGEYILNPTVDDMQDLRLNPEQR
LDLVVAGTKDAVMMVESEAYELSEAEMLGAVKFAHDAIQPVLDLIIDLAEDCAKEPFDFS
PPDYSELSAAVKAAGETEMRAAFAISDKQERTTAVAAARETIMAALSDEQKEDPNLGSAM
KGLEASILRGDVVKTGKRIDGRKTDEIRDIVCETGLLPRTHGSALFTRGETQGLVVTTLG
TGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVLPA
ATDFPYTVRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGSYA
ILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALEQAKAGRIHILGE
MAKSITGAQDFSIHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGIIKI
ASPNGEAIKKAYDMIHSIVAEPEEGMVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEIKKEEAPAD
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacgagacgaaaaaatcgattgagtggggcgaagagacgctcacactcgaaaca
ggaaaagtggcccgccaagcggatgggtcggtgattgcaacgctgggcgagaccagcgtc
atggcaaacgtcacctttgccaagaaacaaaaaccgggtcaggatttctttccgctgacc
gtacattatcaggaaaaatactacgcggcaggcaaagtccccggtggtttcttcaagcgc
gaagcgcgcccgactgaaaaagagacactgacagcacgtctgattgaccgcccgctgcgc
ccactcttcgtccccggcttcaagaacgaagtgctggtgatgtgcaccgttttgtcccac
gatctggtgaatgatcccgatatggtcgcgatgatcgcagcctcggcggcgctgaccatc
tccggcgcgcccttcatggggccaatcgctggtgcccgcgtcggttttgaggatggcgaa
tatatcctgaacccgaccgttgatgacatgcaggatttgcgcctgaaccctgaacagcgc
cttgatctggtcgttgccggaaccaaagacgcggtgatgatggtcgaatccgaagcctat
gagctgtccgaagcggaaatgctgggtgcggtgaagtttgcccatgacgcgatccagcct
gtgctggacctgatcattgatctggcagaagactgcgccaaggagccgtttgacttttca
ccgcccgattactctgagctttccgctgcggtcaaagctgccggtgagacagagatgcgc
gccgctttcgcgatttccgacaagcaggaacgcaccacagctgttgctgccgcccgtgaa
accatcatggccgcgctgagtgacgagcagaaagaagaccccaacctcggctccgcgatg
aaagggcttgaagcctccatcctgcgcggcgacgtggtgaaaacgggcaagcggatcgac
ggtcgtaaaaccgatgaaatccgtgatatcgtatgtgaaacgggtcttttgccccgcacg
cacggctccgcgctgttcacccgtggtgaaacgcagggcctcgttgtgaccactttgggc
accggcgatgatgagcaattcatcgacgcgctgcacgggaatttcaaatcgaacttcctg
ctgcattataacttcccgccctattcggtcggtgaagcaggtcgcgtgggccctcccgga
cgtcgtgaaatcggtcacggtaaactggcgtggcgtgcgttgcaggcggttctgccagcg
gcgaccgacttcccctataccgtgcgtgttgtttccgagatcaccgaatccaacgggtca
tcttcgatggcatcggtctgcggtggttccttgtccatgatggacgcaggcgttccgctc
aaggcaccggttgccggtgtggccatgggtctgatcctcgaagaggacggttcctatgcg
atcctgtcggatatcctgggtgacgaagaccaccttggcgacatggacttcaaagtggcc
ggtacagaagccgggatcacatcgttgcagatggacatcaagatcgcaggcatcacgccc
gagatcatggagaaagcactggaacaggccaaagcgggtcgcatccacattctgggcgag
atggccaaatccatcaccggcgcgcaggatttctcgatccacgcaccacgcatcgaaacc
atgcagatcccgacggataagatccgcgaagtgatcgggtcaggtggtaaggtgatccgc
gagatcgtcgaagtatccggtgccaaagtggatatcaacgacgaaggcattatcaagatt
gccagcccgaacggcgaagcgatcaagaaagcctacgacatgatccactccatcgtggcc
gaacccgaagaaggcatggtctacaccggtacggttgtgaaaatcgtcgacttcggtgct
ttcgtgaacttctttggcaagcgcgacggtctggtgcatgtctcccagatcgagaaccgc
cgcctgaaccacccttccgacgttctgaaagaaggccaggaagtaaaggtcaagctgctg
ggctttgatgatcgcgggaaggtgcgcctgtcgatgaaagtcgtcgatcaggaaaccggc
gaagaaatcaagaaagaagaagcgccggcagactga
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