Roseobacter denitrificans: RD1_0814
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Entry
RD1_0814 CDS
T00376
Name
(GenBank) MiaB-like tRNA modifying enzyme, hypothetical
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase [EC:
2.8.4.5
]
Organism
rde
Roseobacter denitrificans
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rde03016
]
RD1_0814
Enzymes [BR:
rde01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
RD1_0814
Transfer RNA biogenesis [BR:
rde03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
RD1_0814
Prokaryotic type
Methylthiotransferases
RD1_0814
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
B12-binding
Motif
Other DBs
NCBI-ProteinID:
ABG30491
RoseoBase:
RD1_0814
UniProt:
Q16C02
LinkDB
All DBs
Position
796622..797875
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AA seq
417 aa
AA seq
DB search
MSAPKFTTLGCRLNAYETEAMKELAAEAGLSDAVVVNTCAVTGEAVRKARSTIRKLRREN
PTARLIVTGCAAQTEPQTFAAMPEVNAVIGNTEKMQGDTWGALAADFIGESEAVQVDDIM
SVTETAGHLIDGFGTRSRAYVQVQNGCDHRCTFCIIPYGRGNSRSVPAGVVVDQIKRLVD
KGFNEVVLTGVDLTSWGADLPAQPKLGDLVMRILRLVPDLPRLRISSIDSIEVDENLMQA
IATEHRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIRFAQDARRLRPDMTFGADIIVGFP
TETEAMFDNSLALVEECDLTWLHVFPYSARPGTPAARMPAVHGQIIKERASRLRAAGDAQ
VQRHLSAQVGKVHNVLMESASRGRTEQFTEVQVSTPRQEGRIIPLPITGTVGAALQG
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcacccaaattcacgacccttggctgccgtttgaacgcctatgagaccgaagca
atgaaagaactcgccgctgaggccggtctgtcggatgctgtggtggtaaacacctgtgcg
gtgacgggcgaagccgtgcgcaaagcccgcagtacgatccgtaaactgcggcgtgaaaac
ccgacagcacgcctgatcgttaccggatgcgccgcccagacagagccgcaaacctttgcc
gcgatgcccgaagttaatgcggtcattggtaacaccgaaaagatgcagggcgatacctgg
ggcgcgctcgccgccgatttcatcggcgaaagcgaagcggtgcaagttgatgacatcatg
tccgtgaccgagaccgcaggtcatctgattgacggctttggcacccggagccgggcttat
gtgcaggtgcagaacgggtgcgaccatcgctgtactttttgcatcatcccctatggccgc
ggcaattcgcggtcggttccggctggcgttgttgtcgaccagatcaagcgtttggtcgat
aaggggttcaacgaggtcgtgctcacgggcgtggacctgaccagttggggggcggattta
ccggcccagccaaagcttggtgatctggtcatgcgaattctcaggcttgtcccggatttg
ccgcgtttgcggattagttcaatcgacagcatcgaggttgacgaaaacctgatgcaggcg
attgccaccgagcatcggttgatgccgcatttgcacctgtcattgcagcacggcgatgac
atgatcctcaagcggatgaaaaggcggcacttgcgggatgacgccattcgctttgcgcag
gatgcccggcgtttgcggccggatatgacgtttggcgctgatatcatcgtgggttttccg
accgaaacggaggcgatgttcgataactccctggcgctggttgaggagtgcgatctgacg
tggctgcatgtttttccctactccgcgcgaccaggcacacctgcggcgcgcatgcctgct
gtccatggtcagatcatcaaggaacgggcatcgcgcttgcgcgccgccggagacgcgcaa
gtccagcgacatctttccgcgcaggttggtaaggtgcacaacgtgctgatggaaagtgcg
tccagggggcgtaccgagcagtttaccgaagttcaggtttcgacaccgcgacaagaaggc
aggatcatcccgttgcccatcacagggaccgttggtgccgctttgcaggggtga
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