Roseobacter denitrificans: RD1_0988
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Entry
RD1_0988 CDS
T00376
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rde
Roseobacter denitrificans
Pathway
rde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RD1_0988 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rde03019
]
RD1_0988 (deaD)
03009 Ribosome biogenesis [BR:
rde03009
]
RD1_0988 (deaD)
Enzymes [BR:
rde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RD1_0988 (deaD)
Messenger RNA biogenesis [BR:
rde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RD1_0988 (deaD)
Ribosome biogenesis [BR:
rde03009
]
Prokaryotic type
rRNA helicases
RD1_0988 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
DUF7995
Motif
Other DBs
NCBI-ProteinID:
ABG30655
RoseoBase:
RD1_0988
UniProt:
Q16BI8
LinkDB
All DBs
Position
complement(952996..955113)
Genome browser
AA seq
705 aa
AA seq
DB search
MALPIGYFVLKTLSDALAEQGYDTLTPVQEAVTAPELAKADLLVSAQTGSGKTVGFGLAI
APTLLGEQEHFGPAGTPLALIIAPTRELAQQVARELSWLYAKAGAVVISCVGGMDTRTER
RALDRGAHVVVATPGRLCDHIKRGNIELSGLRAVVLDEADEMLDLGFREELEFILDEAPT
DRRTLLFSATVPKAIAKLAESYQRDAQRIETVSETRQHADIEYRALNTHPRDVENAIINV
LRFYEAKNAIVFCNTRAAVARLTTRFTNRGFSVVALSGELTQSERSNALQALRDGRARVC
VATDVAARGIDLPNLELVIHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPPKLRTKANR
LLGWAKLKAEWGTPPSAAEVNAQDTARLLSDPLWNATVSEEAEELVAQLAQDFSATQLAQ
AVVSFYQAQRSAPEELTDPTTPDDRPRKTFGPSVWFSVSVGRDAGAEPRTLLPMICNKGD
MTKDDIGAIRIRQDQSFVEVLASRADGLVAALGSDMTLEAGVVLTRLAQAPDLGQDRPGT
SKPGAKPHRKKRPEDRDARPERAARPARAASPAQDARKDKPHKPAAAAKGKKPPKSHKTE
RSPMKPGAAPKPKSTRGENPDRKPGKAKAVWTKDARDTARAEKVTRDKAHREDSGAGRPT
AKGGPRKDPSASKKRAADTSKRFVPPHKRGKSTGKGPNARPQRKG
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
gtggctctaccgataggatatttcgtgctcaagaccctttcagatgcgctggccgaacaa
ggctatgacaccctcaccccggttcaggaagccgtcaccgcacccgaactggcaaaggcc
gatttgctggtctcggcacagaccgggtccggcaaaacggtcggcttcgggctggcgatt
gcgcccacactgctgggggagcaggaacattttggccccgcaggcaccccgctggcgctg
atcatcgccccgacacgcgagttggcacagcaggtcgcgcgcgaactgtcctggctctat
gccaaggcgggggcggtcgtgatctcctgtgtcggcggcatggacacgcgcaccgaacgg
cgtgcccttgatcgcggggctcatgtggttgtggccacgccggggcggctgtgcgatcac
atcaagcgtggcaatatcgaactgtccggcctgcgcgccgtggttctggacgaagcggat
gaaatgctcgacctcgggtttcgcgaagagcttgaattcatcctcgatgaagcgcccacg
gaccgccgcaccctgctgttttccgcaaccgtgccaaaggccatcgccaagctggccgaa
agctatcagcgcgatgcgcagcgcatcgaaaccgtctccgaaacccgccagcacgcagat
atcgaataccgcgccctcaacacacatccgcgcgacgtggaaaacgcgatcatcaatgtc
ctgcgcttttacgaggccaagaacgcgatcgtcttttgcaacacgcgcgccgctgttgcg
cggcttacgacgcgctttaccaatcgcggattttcggtcgtcgcactctcgggtgagttg
acccaatccgaacgcagcaacgccttgcaagcgctgcgcgatgggcgcgcgcgcgtctgc
gttgccaccgatgtggccgcgcgcggcattgatctgcccaacctcgaactggtgatccac
gccgatctgccgagcaattccgacacgctgttgcaccgctccgggcgcacggggcgggcc
gggcgcaaaggggtctcggcgctgatcgtgcccccgaaactgcgcacaaaggcgaaccgt
ctgctgggctgggcgaaactcaaagcggaatggggcacaccgccttctgcggctgaggtc
aacgcgcaggataccgcgcgcttgctgtcggatccgctgtggaatgccaccgtcagcgag
gaggccgaagagcttgtcgcgcaactcgcgcaggatttctccgccacgcaattggcgcag
gcggtggtgagcttttatcaggcgcaacgctccgcacccgaggaattgaccgatcccaca
accccggatgaccggcctcgcaagacctttggcccctcggtctggttctcggtttcagtc
gggcgcgacgcgggtgccgaaccccgcacactcctgccgatgatctgcaacaagggcgat
atgacaaaggatgacatcggcgccatccgcatccggcaggaccagagttttgtcgaagtg
ctggcgtcacgggcggatgggctggttgccgcgctcggcagcgacatgacgctcgaagcc
ggggttgtgctgacccgtctggcccaagcacccgatctggggcaggaccgtcccggcacc
agcaagcccggtgccaaaccacaccgcaaaaaacggcccgaggaccgcgatgcccgtcct
gaacgcgccgcaagacctgcccgcgctgcaagccccgcgcaggacgcacgcaaggacaaa
ccgcacaaaccggcggccgccgccaaaggcaaaaagccacccaaatcacacaagaccgaa
cgctcccccatgaaaccgggggccgcgcccaaacccaaaagcaccagaggcgaaaacccg
gatcgcaaacccggcaaggccaaagcggtctggacaaaggacgcccgcgacaccgccaga
gcggaaaaagtcacccgcgacaaggctcaccgcgaagacagcggtgccgggcgccccaca
gcaaaaggtggccccagaaaagacccaagcgcatcgaaaaagcgcgccgcagatacatca
aaacgcttcgtgcccccgcataaacgcggcaaatcaaccggcaagggcccgaatgcgcgc
cctcagcgcaaaggctga
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