Roseobacter denitrificans: RD1_1111
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Entry
RD1_1111 CDS
T00376
Name
(GenBank) exonuclease, putative
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rde
Roseobacter denitrificans
Pathway
rde03030
DNA replication
rde03430
Mismatch repair
rde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RD1_1111
03430 Mismatch repair
RD1_1111
03440 Homologous recombination
RD1_1111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rde03032
]
RD1_1111
03400 DNA repair and recombination proteins [BR:
rde03400
]
RD1_1111
Enzymes [BR:
rde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RD1_1111
DNA replication proteins [BR:
rde03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RD1_1111
DNA repair and recombination proteins [BR:
rde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RD1_1111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
RNase_H_2
Rv2179c-like
DNA_pol_A_exo1
DEDDh_C
MACPF_D2
Motif
Other DBs
NCBI-ProteinID:
ABG30767
RoseoBase:
RD1_1111
UniProt:
Q16B76
LinkDB
All DBs
Position
complement(1062596..1063993)
Genome browser
AA seq
465 aa
AA seq
DB search
MKNLSLRLRVFLFFCLTAFGSIAICLGALYMGFRQLGDGDALSAFITSGVIAGFGILGLV
VLIWLLFDENVSKPIEALAASLRVRTHVDIDTEIEAETAKYLGDLAPAVCAIHRKLRDET
RASSEAVVERTARLDAQRSQLLQILSDIPVAVIVARQDHQIILYDGQAADLMERECPARL
KGSVFDYLDKQSVLEALSALKKQNALRHEIALKGRSGAVYKGHIRVFGADAGYTLMLEPL
RPDAARPLVYDFDLLDFEEPTSLDQTRLRDLTFVVFDSETTGLDPHTDEVVQLGAVRVVN
GKIIEGEVFDTLVNPGRTIPPGSTAVHQISDAMVADAPGFDVACRAFHQFAEHAVIVAHN
APFDMAFLRRQCRDQDYAFDNPILDTVHLSAVVFGGSAEHTLDALCDRLNVHIPDDVRHT
GLGDALATAKALVALIPVLEARGFTTFEQVRAEIQKHSRILKVEA
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacctcagcctccggctccgggtctttctgttcttttgcctgacggcctttggc
agtatcgcgatctgccttggcgcgctttacatggggtttcgccagttgggggacggtgat
gcgctgtcggccttcatcacgtccggtgtgatcgcgggctttggcattctgggtctggtg
gtcctgatctggcttttgttcgacgaaaacgtcagcaaaccgatcgaggcattggccgcc
agtctgcgcgtgcgcacccacgtcgatatcgacacggaaatcgaagcggaaaccgccaaa
tacctcggtgatctggcaccggctgtctgcgcgatccaccgcaagctcagggatgagacg
cgcgcctcctccgaggcggtggtggaacgcaccgcgcggctggatgcgcagcgctcgcaa
ctgttgcaaatcctgtctgacattcccgtcgccgtgatcgtggcgcggcaggatcaccag
atcatcctttatgacgggcaggccgccgacctgatggaacgggaatgccctgcccgcctc
aaaggatcggtgtttgactaccttgacaaacaatccgtgcttgaggccctgtctgcgctg
aaaaagcaaaacgccctgcgccatgagatcgccctcaaaggccgctccggcgcggtttac
aaaggtcacatccgggtgttcggcgcggatgcgggctacaccttgatgctggagccactg
cgccccgatgccgcgcgccctctggtctatgactttgacctgctcgacttcgaagaaccc
acatcgctggatcaaacgagactgcgtgatctgacattcgttgtttttgacagcgaaacg
accggtcttgatccacatacggacgaggttgtgcaattgggcgccgtgcgtgtcgtcaac
ggcaagatcatcgaaggcgaggtctttgatacgctggtcaatcccggccggaccatcccg
ccggggtccacggcggtgcatcagatcagtgatgccatggtcgccgatgcgccgggcttt
gatgtcgcctgccgcgcgttccatcaattcgccgaacacgccgtgatcgtcgcccataac
gccccctttgatatggcattcctcagacgccagtgtcgtgatcaggactatgcgttcgac
aaccccattctggatacggtacatctgtccgcggtggtttttggcggctcggcagaacat
acgctggatgctttatgcgaccgtctgaacgtgcatattcccgatgacgtgcgccacacc
gggcttggcgatgcgctggccacggccaaggcgctggttgcgctgatcccggtgctggag
gcgcggggttttacaacctttgaacaggtccgcgcggaaattcagaaacacagccgcatt
ctgaaggttgaagcctag
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