Roseobacter denitrificans: RD1_1124
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Entry
RD1_1124 CDS
T00376
Name
(GenBank) toxin secretion ABC transporter, ATP-binding component, putative
KO
K12541
ATP-binding cassette, subfamily C, bacterial LapB
Organism
rde
Roseobacter denitrificans
Pathway
rde02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
RD1_1124
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rde02000
]
RD1_1124
02044 Secretion system [BR:
rde02044
]
RD1_1124
Transporters [BR:
rde02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC-BAC subgroup
RD1_1124
Secretion system [BR:
rde02044
]
Type I secretion system
Adhesin protein transporter
RD1_1124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_membrane
AAA_21
SMC_N
Motif
Other DBs
NCBI-ProteinID:
ABG30780
RoseoBase:
RD1_1124
UniProt:
Q16B63
LinkDB
All DBs
Position
complement(1087245..1089515)
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AA seq
756 aa
AA seq
DB search
MTAERRVPISKPDKPAKSRVARITTGSGTEAKTQEIVAKVTRSNPDWALDAGPTDPLAAS
LVEAMRISGTDIAVEVLTGGLGLPSDGRLSPELAVSAAERHGMRARLERRRLGDIDPAEF
PVVLLLRGRDACVLTARNEDETYSVLRPSQASDTLKITQKALLDLYVGHVILLQRQAETL
GDTKLPTASGHWLWGALRPFWPEYMQVVLASVLINFLALAVPLFTMNVYDRVFPNAAIIT
LWSLVAGVALALGFDALLKLLRSGVIDRVGRKVDASVSASVFRHVSNLRLDEDVPPSGSL
MNTLKDYEQVADFFSSQTLSHLIDLAFAVLFIALIYYIGGPLAYPPALALGFVLLMGLII
LRPLRGASEHNRATGGAKTLVASEAVSELETLKAVAGHNRMQSRWERQSADAAMTQAKSR
RLATLATTLTALATQASSIGIVVIGVYLALEGQITMGAVIAAMILSGRALAPTAAVTGLF
VRGSFAISTLQSLGKLMNQRSDADGRGRTINTTDRSGEIELKDVSLNYQGAVVPALKNVS
LKVSAGSHIGIIGPIGAGKTSLTRVMAGLWPPTDGLILLDGLNTRQIAPETLRRFVQLVP
QEAVLFTGTLAENIAFGVPGARDEDILRAARDAGVDRIAASHPDGFGMQITERGRNLSGG
QRQMIALARALLPQPRVLILDEPTSAMDMQSEMLFIDGVERALARKPMTLVVSTHRMALM
RLVTHVAVMTSGTLRSYGPRDEVLSSLKDAGKGTPS
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgcagaacggagggttcccatctccaaaccggataaaccagccaaatcgcgggtc
gcgcgtatcaccacaggcagcggcacagaggccaaaacacaggaaatcgtcgcaaaggtc
acgcggtccaatccggattgggcactggacgctggcccaaccgaccctttggcggcatct
ctcgtcgaagcgatgcgcatcagcgggacagacatcgccgtcgaagtgctgaccgggggc
cttggtctgccgtccgatgggcgtttgtcacccgaactggccgtttctgccgctgaacgg
catggcatgcgcgcgcggctcgaacggcgccgcttgggtgacattgatcccgctgaattc
cccgtcgtcttactgttgcgcggacgtgacgcctgcgttttgaccgcccggaacgaggat
gaaacctattcggttttgcgcccgtcacaggcgtcagacacgctgaagattacgcaaaag
gccctgctggatctctatgtgggccatgtgatccttctgcagcgtcaggccgaaacgctg
ggggataccaagctgcccacggcctccggccattggctttggggggcgttgcgcccgttc
tggccggaatacatgcaggtcgtgctggcctcggtgctgatcaattttctcgccctcgcg
gtgccgctgttcaccatgaacgtctatgaccgcgtctttcccaatgcggccatcatcacg
ctttggtcgcttgttgcgggtgttgcgctggctctggggtttgacgcgctgctcaagctc
ttgcgctcgggagttatcgaccgggtggggcgcaaggtcgatgcctcggtctcggccagc
gtgttccggcatgtctcgaacctgcggctggacgaagacgtgccgccatcgggcagcctg
atgaacacgctcaaagactacgaacaggttgcggatttcttttcatcccagacgctgtcg
catctgattgatctggcttttgcggtgctgtttatcgcgctgatctattacattggtggg
ccgctggcctatccccctgcccttgcgctgggatttgtcctgctgatgggcctgattatc
ctgcgtccactgcgcggtgcgtccgaacacaaccgcgcgaccggcggggcgaaaaccctc
gtggcctcggaggctgtgtcggaactcgaaaccctcaaagccgtggccgggcacaaccgc
atgcaatcccgctgggagcggcaaagtgcggacgccgcgatgacccaagccaaaagccgc
cgccttgcgacactcgccacgacactgacggcgctggccacgcaggcctcctccatcggg
atcgtggtgatcggcgtctatctcgcgctggaagggcagatcaccatgggtgcggtcatt
gccgcgatgatcttgtcgggccgcgcgcttgcccccacagcggcggtcacagggctgttt
gtgcgggggagcttcgcgatctcgaccttgcaatccttgggcaaactcatgaaccaacgc
tctgatgcggatggtcgggggcgcacgatcaacacgaccgatcgttccggtgagattgaa
ttgaaagacgtctcgctgaactatcagggcgcggtggttccggccttgaaaaacgtctct
ctcaaggtatccgccggcagccacattggcattatcggaccgatcggggcaggcaaaaca
tcgttgacgcgggtgatggccgggctgtggccccccacggatgggctgatcctgctggat
ggtttgaatacacggcagatcgcccccgaaacgctgcgccgctttgtgcaactggtcccg
caggaagcggtgcttttcaccggcacccttgccgagaacatcgcctttggcgttcccggt
gcacgagacgaggatatcctgcgtgccgcgcgtgacgcgggcgtggatcggatcgccgcc
agccacccggatgggtttggcatgcagatcaccgaacgcgggcgcaatctgtcgggcggg
caacgccagatgatcgcgctggcccgcgcattgctgccgcagccgcgcgtgctgatactg
gacgaaccgacttccgcgatggatatgcaatcagagatgctgtttattgacggtgttgaa
cgggcgctggcgcgcaaacccatgacccttgtggtctcgacccatcgcatggcgcttatg
cggctcgttacacatgtggctgtcatgaccagcggcaccttgcgcagctatggaccccgt
gacgaggtgctgtcgtcgttgaaagacgctggcaagggcacgccatcatga
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