Roseobacter denitrificans: RD1_1206
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Entry
RD1_1206 CDS
T00376
Symbol
pbpA
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00550
Peptidoglycan biosynthesis
rde01100
Metabolic pathways
rde01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RD1_1206 (pbpA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
RD1_1206 (pbpA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rde01011
]
RD1_1206 (pbpA)
Enzymes [BR:
rde01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
RD1_1206 (pbpA)
Peptidoglycan biosynthesis and degradation proteins [BR:
rde01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
RD1_1206 (pbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
ABG30855
RoseoBase:
RD1_1206
UniProt:
Q16AY8
LinkDB
All DBs
Position
complement(1169319..1171262)
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AA seq
647 aa
AA seq
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MKRTRAETDFSHRHLSRRAALLGGAQLLFIGGLAARMRYLQVEQADEFRLLAEENRINVR
LIPPSRGEVFDRNGVRLAQNAPSYRIVIIKEDAGDVDASLKQLSRIIALDDNAIARVKEE
MRRSAPFLPVTVASDVTWDEISRVSVNAPALPGITPEVGLSRVYPQGSDFAHVLGYVGPV
SDYDLSKITDPEPVLMIPRFQIGKVGVETKLEPLLRGKAGAKRVEVNATGRVMRELDRQE
GTAGSDVQLTVDAALQGYVQARLTGESASAVIIDCDNGDLVACASAPTFDPNLFVRGISQ
KDYGALTSNKYRPLASKTVQGLYPPGSTFKMITAMAALEAGLIGPDETAYCPGHLEVSGR
RFHCWKRAGHGWVDLQDSLKKSCDVYYYDLAIKVGIEKITAMANRFGLGVKHDVPMSAVA
SGLMPTMEWKQINQGQSWRVGDTVNASIGQGFLLASPLQLAVMTARLATGRAVSPRLIKS
IDGVEQPDRGGENMGMNENNLRKMRRAMFAVVNDRRGTAYGSRVIEEEMRMAGKTGTSQV
RNITAAERRAGVIRNEDLPWERRDHALFVNFAPYDRPKYAVAVIVEHGGGGSKAAAPIAR
DITLQALYGGTPPLEAYPAKDRERIGTLQKELQKMQPQAAISGRDQA
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacggacacgggcagaaacggatttcagccatcggcacctgtcacgacgcgccgca
cttcttggcggggcgcaattgctgttcattggcgggttggccgcgcgcatgcggtacctg
caggtcgaacaggccgatgaattccgactgctggccgaagaaaaccgcataaacgtgcgc
ctgatcccaccgtcgcgcggggaggtttttgacaggaacggggttcggctcgcacaaaac
gcgccctcttatcgcattgtgatcatcaaggaagacgccggcgatgtggatgcctctctg
aaacagctgtccaggatcattgcgcttgacgacaatgcgattgcccgcgtcaaggaggag
atgcgcaggtcagccccgtttctgcccgtcaccgtcgcgtcggacgtcacttgggatgaa
atcagccgtgtttcggtgaatgcgcccgccttgccgggcatcacacccgaggtggggctc
agccgtgtctatccgcaaggctctgactttgcgcatgttttggggtatgtgggcccggtg
tcggattatgacctttcaaagatcactgacccggaaccggtcctgatgataccccggttt
cagatcgggaaggtgggcgtggaaaccaagctcgaaccgcttttgcgcgggaaagccggg
gccaaacgggtcgaggtcaacgccacgggacgcgtgatgcgtgaactcgaccgtcaggag
ggcactgccggatcggatgtccagcttaccgttgatgcggccttgcaggggtatgtgcag
gcgcgtctgaccggcgaaagtgcgagcgcggtgatcatcgactgtgacaacggcgatctt
gtcgcctgcgcctcggccccgacatttgatcccaatttgtttgtgcgcggcatctcgcaa
aaagactacggggcgctgaccagcaacaagtaccgcccgctggccagcaagaccgttcag
gggctgtacccgccggggtccaccttcaagatgatcaccgccatggccgcccttgaggcc
gggctgatcgggccggatgaaactgcctattgccccggccacctcgaagtgtccggtcgc
cggtttcactgctggaaacgcgcaggccacgggtgggtggatttgcaggattcgctcaag
aaatcctgcgatgtctattactatgatctggccatcaaggtcggtattgaaaagattacc
gcaatggccaatcgttttggccttggcgtgaaacacgatgtgcccatgtcagccgtcgcc
tccggcctgatgccgacgatggaatggaaacagatcaatcaaggccaatcctggcgggtc
ggtgacacggtcaatgcctccatcgggcaagggtttttgctggcctctcccctgcagctt
gcggtcatgaccgcgcgacttgccaccgggcgcgcggtatccccgcggctgatcaaatca
atcgacggtgttgaacaacccgatcgcggtggcgaaaacatgggtatgaatgagaacaac
ctgcgcaagatgcgcagggccatgtttgccgtcgtcaatgaccggcggggcactgcctat
gggtcacgcgtgatcgaagaagagatgcgcatggccggtaaaaccggcacaagtcaggtg
cgcaacatcaccgccgcagaacgccgcgcaggtgtcatccgcaacgaggatctgccgtgg
gaacgccgcgatcatgccttgtttgtgaatttcgcaccatatgaccgcccaaaatacgcc
gtggccgttatcgtcgaacacggcggcggcgggtcgaaagccgccgccccgattgcccgc
gatatcaccctgcaggcgctttatggcggcacaccaccgcttgaggcatacccggccaag
gaccgcgaacgcatcggcacgctgcaaaaagaattgcaaaagatgcagccacaggccgct
atcagcgggcgggatcaggcatga
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