Roseobacter denitrificans: RD1_1244
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Entry
RD1_1244 CDS
T00376
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
rde
Roseobacter denitrificans
Pathway
rde00550
Peptidoglycan biosynthesis
rde01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RD1_1244 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rde01002
]
RD1_1244 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rde01011
]
RD1_1244 (dacB)
Enzymes [BR:
rde01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
RD1_1244 (dacB)
Peptidases and inhibitors [BR:
rde01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
RD1_1244 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
rde01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
RD1_1244 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Peptidase_S11
DUF5110
Phage_HP1_Orf24
Motif
Other DBs
NCBI-ProteinID:
ABG30891
RoseoBase:
RD1_1244
UniProt:
Q16AV2
LinkDB
All DBs
Position
1206605..1208104
Genome browser
AA seq
499 aa
AA seq
DB search
MTKTPCSSFSRRAVVQALMATLATPLAAGAPLVSERPPRGRGPVRPPGPEALVKKARLSG
DVAFAVADAKTGEILEARAPELGIAPASVTKAITALYALDTLGAAHRFKTRVIATGGVTD
GVVRGDLVLAGGCDPTTDTRAFAALAAQLKEAGIREVKGDFRVYEGPVATVRSIDPEQPD
HVGYSPAVAGIALNFNRVHFEWKRAGGKYTVTMDARAGRYRPEVAVARMKVVQRRAPIYT
YEEANGRDNWTVASGALGSGGSRWLPVRRPGLYAGEVFATLARSHGIVLPAAKLQKAAPQ
GAVLAEIESAPLSDVLRAMLKYSNNLTAEMIGMAATQARTGQVRSLAASAREMNAWAKDV
LKMQSPAFVDHSGLGGDSRVSAQDMVRGLGAIGHAALLRPLLKSVKLLDSQGRLVNEHPV
QADAKTGTLNFVSGLGGYVTTPEGRELVFAIFAADEATRAGITRAQRERPPGGRSYATRA
RRLQRQLIMRWGAVYDPAA
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagacaccttgttcgagtttttcacgccgcgctgtggtgcaggcgttgatggcg
acgcttgcgacacctctggccgccggcgcgccgcttgtgtccgagcgtcccccaagaggg
cgtggccccgtgcgcccgcccggtccggaggcgctggtgaaaaaggcgcggctgtcgggt
gatgtagcctttgcggttgcggatgccaaaaccggtgagatccttgaggcgcgcgccccc
gaactgggtatcgcgcccgccagcgtgaccaaggcgatcacggcgctttatgcgctggac
acattgggggccgcgcaccggttcaagacccgcgtgattgcgacgggcggtgtgacggat
ggtgtggtccggggcgatctggttctggccggtgggtgtgatccgacaacggatacgcgc
gcctttgcagcgctggccgcacagttgaaagaggcgggcattcgcgaggtcaaaggggat
ttccgtgtctacgaagggcccgttgccacggtgcgttccatcgatcctgagcagccggat
catgtgggctacagcccggcggtggccgggatcgcgctcaacttcaaccgtgtccatttc
gaatggaaacgggcggggggcaaatacaccgtgaccatggatgcgcgcgcagggcgctac
cgcccggaggtggcggttgcgcgtatgaaggtcgtgcaacggcgcgcgccgatttacacc
tatgaggaagcgaacggccgcgataactggaccgtcgccagtggcgccttggggtcgggc
gggtcgcgctggctgccggtgcgccgaccggggctttatgcgggggaggtgtttgcaacg
ctcgcccggtcgcacgggatcgttctgcctgcggccaagctgcaaaaggcagcgccacaa
ggggccgttctggccgagatcgagagcgcgccactcagtgacgtgttgcgcgcgatgctg
aagtattcaaacaacctgaccgctgaaatgatcggaatggcggcgacgcaggcgcggacc
gggcaggtgcgcagccttgccgcgtcagcgcgcgagatgaatgcatgggccaaggatgtg
ctgaaaatgcaaagcccggcctttgtcgatcactcaggacttgggggcgacagccgggtc
agcgcgcaggatatggtgcgcggcctcggggccattggtcacgcggccttgctgcgcccg
ctgctcaagtcggtgaagctattggactcgcaggggcgtctggtcaatgagcacccggtg
caggcggatgccaaaaccggcacgctgaatttcgtttcgggactgggcggctatgtcaca
acgcccgaggggcgcgagttggtattcgccatttttgccgccgatgaagccacaagggcg
ggcattacccgtgcgcagcgcgaacgcccacccggcgggcgcagctatgccacacgggcg
cgccgcctgcagcggcagttgatcatgcggtggggggcggtctacgacccggcggcgtaa
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