Roseobacter denitrificans: RD1_1254
Help
Entry
RD1_1254 CDS
T00376
Symbol
uvrB
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
rde
Roseobacter denitrificans
Pathway
rde03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RD1_1254 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rde03400
]
RD1_1254 (uvrB)
DNA repair and recombination proteins [BR:
rde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RD1_1254 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RD1_1254 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_22
Kinesin
DUF87
eIF3_p135
AAA
HIND
Motif
Other DBs
NCBI-ProteinID:
ABG30901
RoseoBase:
RD1_1254
UniProt:
Q16AU2
LinkDB
All DBs
Position
complement(1214822..1217020)
Genome browser
AA seq
732 aa
AA seq
DB search
MPYAHSDTTEAVLANAAPDVRAREKLEGGKRFKLATDFEPAGDQPTAIKELAAGVLSGER
DQVLLGATGTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSFY
DYYQPEAYVARSDTYIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVET
YGAMTQDLKTGRMYDQRQVMADLVAQQYRRNDQSFQRGSFRVRGDSLEIFPAHLEDRAWK
LSFFGEELESITEFDPLTGEKTNTFEQIRVYANSHYVTPKPTMQQAIISIKKELRTRLDQ
LVGDGKLLEAQRLEQRTNFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNA
IVFADESHVSVPQIGGMYKGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVS
ATPAAWEMDQTGGVFTEQIIRPTGLIDPEIEIRPVEMQVDDLLDEVRKVAADGFRTLVTT
LTKRMAEDLTEYMHEQGIRVRYMHSDIDTLERIEILRDLRLGAFDVLIGINLLREGLDIP
ECGLVAILDADKEGFLRSETSLIQTTGRAARNAEGRVIMYADRITGSMERAIEETNRRRA
KQIAYNEKHGITPTTVKKNVEDILAGLYKGDTDQSRVTAKIDKQMAGGNLQAVLDGLRTD
MRKAAENLEFEEAARLRDEVKRLEAVDLAIADDPMARQYAVEKAVEDSAKASGRSTLGRG
GMRGGVKRKRGR
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgccctacgcacattccgacaccaccgaggccgttctggccaacgctgcacccgacgtg
cgcgcccgcgagaaactggagggtggcaagcgcttcaagctggcgaccgacttcgaaccc
gcaggtgaccagcccaccgccatcaaggaactcgctgccggtgtgctgagcggggaacgc
gaccaagtgcttctgggggcgaccggcacgggcaagacctttaccatggccaaggtgatc
gaggaaacgcaacgccccgcgatcattctggcccccaacaaaaccctcgctgcccagctc
tatggcgagttcaaagggttctttcccgataacgcggtggagtatttcgtcagcttctac
gactactatcagcccgaagcctatgtggcgcgctcggatacctacatcgagaaagagagc
cagatcaacgaacagatcgaccgcatgcgccactccgcgacacgcgccctgcttgaacgc
gacgacgtgatcatcgtggcctcggtgtcctgcatctatggcatcggatcggtggaaacc
tacggcgccatgacgcaggacctcaagaccgggcggatgtatgaccagcgacaggtgatg
gcggatctggtggcgcagcaataccgccgcaacgatcagtcctttcagcgtgggtctttc
cgggtgcgcggcgacagcctcgaaatctttcccgcccaccttgaagaccgcgcctggaag
ttgtcttttttcggcgaagaactggaatctatcaccgaattcgacccgctgaccggtgag
aaaaccaacacattcgagcaaatccgcgtttatgccaacagccactacgtgacgccgaaa
cccacgatgcagcaggcaatcatcagcatcaagaaagagctgcgcacccggctcgatcaa
ctcgtgggcgatggcaaactgctcgaagcgcagcggctggagcagcgcacgaacttcgac
cttgagatgctggaagccacgggcgtgtgcaacgggatcgagaactattcgcgctatctg
accggtcgcgcaccgggggagccgccccccacgctctttgaattcatccccgacaacgcc
atcgtctttgccgatgagagccacgtctccgtgccgcagatcggcggcatgtacaaaggc
gactaccggcgcaaattcacgctggccgaacacgggttccgcctgccttcctgcatggac
aaccgccccctcaagttcgaggaatgggacgccatgcgcccgcaatcggtctttgtttcc
gccacgcccgccgcctgggaaatggaccagacaggcggtgtgtttaccgaacagatcatc
cgccccaccggcctgatcgacccggaaatcgaaatccgcccggtcgagatgcaggtggac
gatctgctggatgaagtacgcaaggtggccgccgatggcttccgcacactggtcacgacg
ctcaccaaacgcatggccgaggacctcaccgaatacatgcacgaacagggcatccgcgtg
cgctacatgcacagcgatatcgacacgctggaacgcattgaaatcctgcgcgatctgcgg
ctgggtgcctttgacgtgctgatcgggatcaacctgctgcgcgaaggtttggacatcccc
gaatgtgggctggtggcgattctggatgcggataaggaaggcttcctgcgctctgaaacc
tcactgatccagaccacggggcgcgccgcgcgcaatgccgaagggcgcgtgatcatgtac
gccgaccgcattaccggctcgatggaacgcgcgatcgaggaaaccaaccgccgccgcgcc
aaacagatcgcctataacgaaaaacacggcatcaccccgacaacggtgaaaaagaacgtc
gaggatatcctcgccgggctttacaaaggcgacacggaccaatcccgcgtcaccgccaag
atcgacaagcagatggcgggcggcaacctgcaggcggtgctggacgggctgcgcacggat
atgcgcaaggccgccgagaacctcgaattcgaagaggccgcaaggttgcgcgacgaagtc
aaacgcctcgaagccgtcgacctcgccatcgccgacgaccccatggcgcgtcagtatgca
gtggaaaaagccgtggaagacagcgccaaagcctcaggccgcagcacactgggccgcggc
ggcatgcgcggcggggtgaagcggaagcgggggcgttaa
DBGET
integrated database retrieval system