Roseobacter denitrificans: RD1_1291
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Entry
RD1_1291 CDS
T00376
Name
(GenBank) dipeptide ABC transporter, putative
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
rde
Roseobacter denitrificans
Pathway
rde02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RD1_1291
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rde02000
]
RD1_1291
Transporters [BR:
rde02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
RD1_1291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
DUF6566
UCR_Fe-S_N
Motif
Other DBs
NCBI-ProteinID:
ABG30936
RoseoBase:
RD1_1291
UniProt:
Q16AQ7
LinkDB
All DBs
Position
complement(1252598..1254259)
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AA seq
553 aa
AA seq
DB search
MTFLTSTGKPLPKSILDSAAKTGNDAVSRREFLALASAFGATSATAYAMLGLSAPKAHAA
AHTMGGTVRIQQEVRALKDPRTYDWSQIANFSRGWLEYLVHYENDGTFTGKLLESWEINE
DATVYTLNVRQGVKWNDGSDFTAEDVARNIAGWCDKSLEGNSMAGRFATLIDPNTDQAID
GAIEVVDSHTVRLNLPSADISLIPGMADYPAAIVPAGFSAETMLDNPVGTGPYLPESLEV
GVKAVLVRNEGHTWWNAGNGAWIDRVEYIDYGTDPSAFVAAAEAEEIDMTYSIEGDFIDI
FDTLDGWQNNAVVTGATIVIRPNQQVEVDGIRPYEDKRVRQAISMAVDNAVLLELGYAGR
GEVAENHHVGPMHPEYAELPPRKHDPAAAKALMDEAGMGDFEHELFSIDDAWRKDTTDAV
AAQLRDAGINVKRTILPGSTFWNDWTKYPFSSTNWNHRPLGVQIWALAYRSGEAWNEFGW
SNEEFDAILTEALATPDLEARRALMKKGQAIIQEEGVTIQPYWRSLYNHTREGLVGGEHH
ISFEIRPEQIAWT
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgacatttctgacaagcaccggcaaacccttgccgaagtccattctggactccgctgcg
aagaccggcaacgacgccgtaagccgacgcgagtttctagcgctcgcgagcgctttcggt
gcgacatccgccaccgcctatgcaatgcttggcctcagcgcgcccaaagcgcatgcagcg
gcgcacacgatgggcggcacggtccgcattcaacaggaagtccgcgcgctcaaagacccg
cgcacctatgactggagtcagatcgcgaacttcagccgcggctggctcgaatacctcgtc
cattacgagaacgacggcacctttaccggcaagctgctggaaagctgggaaatcaacgaa
gacgcgactgtttacaccctgaatgtgcgtcagggcgtcaagtggaacgacggcagcgat
ttcactgccgaagacgtggcacgcaacatcgccggctggtgcgacaagagccttgagggc
aattcaatggcaggccgctttgcgaccctgattgatcccaatacggatcaggccatcgac
ggcgcaatcgaggtcgtggacagccacacggtacgcctcaatctgccctctgcggatatc
tcgctgatccccggcatggccgactatccggctgcgattgttccggcgggcttctcagcg
gaaacgatgctcgacaacccggtgggaacagggccttacctgcctgaatcgctggaagtc
ggcgtgaaggccgttctggtgcgcaacgaggggcacacctggtggaacgcaggcaatggt
gcctggatagaccgggtggaatacatcgactatggcacggacccttccgcctttgtcgcg
gcggcagaagccgaagagatcgacatgacctactccatagagggtgatttcatcgacatc
tttgacacacttgacggctggcaaaacaacgccgttgtgacaggcgccacgatcgtcata
cgacccaatcagcaggtcgaagtcgacggcatcaggccctatgaagacaaacgcgtccgt
caggcgatttcgatggccgttgacaacgcggtgctgctggaactggggtatgccgggcgg
ggagaggtagccgaaaaccaccacgttggccccatgcatcccgaatacgcggaattgcca
ccgcgcaaacatgatccagccgccgccaaggcgctgatggacgaagccggcatgggagat
ttcgagcatgaattgttctcgattgatgatgcctggcgcaaggacacaacagacgccgtg
gcagcccagctgcgcgacgcgggcatcaatgtgaaacgcaccatcctgcccggctcaacc
ttctggaacgactggacgaagtacccgttctcctccaccaactggaaccaccgccccctt
ggtgtgcagatctgggcacttgcctatcgctccggcgaggcgtggaacgaattcggttgg
tccaacgaagagttcgacgccatcctcaccgaggcgctggcaacgcccgacctcgaagcg
cgccgtgcgctgatgaagaagggtcaggcgatcattcaggaagaaggtgtaaccatccag
ccctattggcgctcgctttacaaccacacgcgcgaaggactggtcggcggtgagcaccac
atctcattcgagatccgtccggagcagatcgcctggacgtaa
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