KEGG   Roseobacter denitrificans: RD1_1315
Entry
RD1_1315          CDS       T00376                                 
Name
(GenBank) signal recognition particle protein, putative
  KO
K03106  signal recognition particle subunit SRP54 [EC:3.6.5.4]
Organism
rde  Roseobacter denitrificans
Pathway
rde02024  Quorum sensing
rde03060  Protein export
rde03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:rde00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03060 Protein export
    RD1_1315
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    RD1_1315
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    RD1_1315
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:rde02044]
    RD1_1315
Enzymes [BR:rde01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.5  Acting on GTP to facilitate cellular and subcellular movement
    3.6.5.4  signal-recognition-particle GTPase
     RD1_1315
Secretion system [BR:rde02044]
 Sec (secretion) system
  Prokaryotic Sec-SRP core components
   RD1_1315
  Eukaryotic Sec-SRP protein
   RD1_1315
SSDB
Motif
Pfam: SRP54 SRP_SPB SRP54_N CbiA AAA_16 Zeta_toxin AAA_33 AAA_31 AAA_30 ResIII AAA_22 nSTAND_NTPase5 Thymidylate_kin VirC1 AAA_14 AAA_5 APS_kinase AAA_18 nSTAND3 NACHT DUF87 KTI12 6PF2K ArsA_ATPase
Other DBs
NCBI-ProteinID: ABG30959
RoseoBase: RD1_1315
UniProt: Q16AN4
LinkDB
Position
complement(1268291..1269808)
AA seq 505 aa
MFENLSERLSGVFDRLTKQGALSEEDVKTALREVRVALLEADVSLPVARDFVKAVQEKAT
GQAVTKSITPGQQVVKIVHDALIDVLKGEGEPGTLKVDNPPASVLMVGLQGSGKTTTTAK
LAKRLKEKDGKRVLMASLDVNRPAAMEQLAILGAQIGVDTLPIIAGQDPVAIAKRAKTQA
GLGGYDVYMLDTAGRLSIDEELMQQVEAVRDVASPRETLLVVDGLTGQDAVHTAQNFDER
IGISGVVLTRMDGDGRGGAALSMRAVTGKPIKFVGLGEKMDALETFEPDRVAGRILGMGD
IVALVEKAQETLELEQSEKMVKRMMKGHFTMNDLRMQLEQMQKMGGMQGMMGMMPGMGKM
AKQVEDAGFDDNILKRQIALIQSMTKKERANPQILQASRKKRIAKGAGLEVSELNKLLKM
HRQMGDMMKKMGKMGKGGMMKQAMKGMFGGKGMGGGPSPQDMAAGMDPKALEAAAKQLGG
GMPGQNPFGGGAALPPGLSGFGKKK
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgtttgaaaatctgtccgaacgcctctccggcgtctttgaccgtctgacaaaacaaggc
gcgctctccgaggaggacgtgaaaaccgccctgcgcgaggttcgcgtcgccctgctggag
gcggatgtctccctgcccgtcgcgcgcgacttcgtcaaagcggtgcaggaaaaagccacc
ggacaggcggtcaccaaatccatcacgcccggccagcaggtcgtcaagatcgtacatgac
gcgctgatcgacgtgctcaagggcgagggtgaacccggcacgctcaaggtcgacaacccg
cccgcctcggtcctgatggtcggcctgcaaggctcgggtaaaaccacgaccaccgccaaa
ctggcaaaacgcctcaaggaaaaagacggcaaacgcgtgctcatggcctcgctcgacgtc
aaccgccccgccgcgatggaacaactcgccatcctgggcgcccagatcggcgtcgacacc
ctgcccatcatcgccggacaggaccccgtcgccatcgccaaacgcgccaaaacgcaagcc
gggctgggcggctatgacgtctatatgctggacaccgccggtcgtctgtccatcgacgaa
gagttgatgcaacaggtcgaagccgtccgcgacgtcgcctccccccgtgaaacgctgctg
gtggtcgacgggctgaccggacaggacgccgtgcacaccgcgcagaactttgacgaacgc
atcggcatctccggcgtggtgctgacccggatggacggtgacgggcgcgggggtgctgcc
ctgtccatgcgcgcggtaaccggcaaaccgatcaaattcgtcggtcttggcgaaaagatg
gacgcgctcgaaaccttcgagccggaccgcgtggcaggccgcatcctcggcatgggcgac
atcgttgcgcttgtcgaaaaagcgcaggaaacgctcgaacttgagcaatccgagaaaatg
gtcaaacgcatgatgaagggtcacttcaccatgaacgatttgcgcatgcagcttgaacag
atgcagaaaatgggcggcatgcagggcatgatgggcatgatgcccggcatgggtaaaatg
gccaaacaggtcgaggatgcaggctttgacgacaatatcctcaaacgccagatcgcgctg
atccagtcgatgaccaagaaagaacgcgccaacccacaaatcctgcaggccagccgcaaa
aagcggatcgccaagggcgcggggctggaagtctccgaactgaacaaactgctcaagatg
caccgccagatgggcgacatgatgaaaaagatgggcaagatgggcaagggcggcatgatg
aaacaggccatgaaaggcatgttcggcggcaaaggtatggggggcggcccctcaccacag
gacatggccgcaggcatggaccccaaagcgctcgaagctgccgcaaagcaattgggcggc
ggcatgcccggtcagaacccgttcggcggcggcgcggccctgccccccggcctgtcaggt
ttcggcaaaaagaaatga

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