Roseobacter denitrificans: RD1_1569
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Entry
RD1_1569 CDS
T00376
Symbol
nirD
Name
(GenBank) nitrite reductase heme biosynthesis D protein
KO
K22225
siroheme decarboxylase [EC:
4.1.1.111
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00860
Porphyrin metabolism
rde01100
Metabolic pathways
rde01110
Biosynthesis of secondary metabolites
rde01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00860 Porphyrin metabolism
RD1_1569 (nirD)
Enzymes [BR:
rde01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.111 siroheme decarboxylase
RD1_1569 (nirD)
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GFIT
Motif
Pfam:
AsnC_trans_reg2
NirdL-like_HTH
HTH_AsnC-type
HTH_24
HTH_20
HTH_IclR
DUF1499
Motif
Other DBs
NCBI-ProteinID:
ABG31197
RoseoBase:
RD1_1569
UniProt:
Q169Z6
LinkDB
All DBs
Position
1492117..1493121
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AA seq
334 aa
AA seq
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MTLDALDWRLMNDWQRALPLVSRPFDEIARRLDTSEACIIERLQKLLETGAISRIGATCR
PNTLAASTLAAVAAPEGQIEEIAAVINAQEGVNHSYERENKWNIWFVATGPTRAFVDDIL
RRITQQTGLRVLDLRLERPFNVDLGFALDGSNALPQPRAVDMDIRIEASDRAIMQALSEG
MTPTACPFADLAARLGQTEAEVLERVRVLAQSGILSRIGLIVRHRALGWRANAMCVFNVP
PDEVEACGLALTAVQGVTLCYERRAVPGVWPYTLYCMIHGRSRAETLDVLSQARVAARLV
PYEYRVLFSTRCFRQQGALIVAPSSKTSGESHAD
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgacgctggatgcgctcgactggaggctgatgaacgactggcaacgtgccttgccgctc
gtgtcacgcccgtttgacgaaatagcgcgccgtcttgatacatcagaggcgtgcatcatt
gaacggctgcaaaagctgctggaaaccggcgcgatcagccggatcggggccacttgccgg
cccaacacgctggccgcaagcacgcttgccgccgttgcagcacccgaaggccagatcgaa
gaaatcgccgccgtgatcaatgcgcaggaaggggtcaaccattcctatgagcgcgaaaac
aaatggaatatctggtttgtcgccaccgggccgacgcgcgcttttgtcgatgacatcctg
cggcggattacgcaacagaccggcctgcgggtgctggatctgcggcttgagcggcccttc
aacgtggatcttggctttgcgctggatgggtcgaacgcgctgccgcaaccgcgcgcggtc
gatatggacatcaggatcgaagccagcgaccgcgcgatcatgcaggcgctttccgaaggg
atgacgcccaccgcctgcccgtttgcggacctcgccgcgcggctgggtcagaccgaggct
gaggtgctggagcgggtccgggtactggcgcagtcgggtatcttgtcgcgcatcggcctg
atcgtgcgccaccgggcgctgggatggcgcgccaatgcgatgtgcgtcttcaatgtaccg
ccggatgaggtcgaggcctgcggacttgcgttgaccgccgtgcagggggtgacgctctgt
tacgagcggcgcgccgtgccgggggtatggccctatacgctttactgcatgatccacggg
cgcagccgcgctgaaacgctggatgttctgagccaggcccgggtggccgcgcgtctggtg
ccctatgaataccgcgtccttttcagcacccgctgttttcgccagcagggtgcgctgatc
gtggcgccatccagcaagacatcaggagaatcacatgcagattga
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