Roseobacter denitrificans: RD1_1659
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Entry
RD1_1659 CDS
T00376
Name
(GenBank) RNA modification enzyme, MiaB-family, putative
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
rde
Roseobacter denitrificans
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rde03009
]
RD1_1659
Enzymes [BR:
rde01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
RD1_1659
Ribosome biogenesis [BR:
rde03009
]
Prokaryotic type
ribosomal protein modification factors
RD1_1659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
CLP1_P
TRAM
Motif
Other DBs
NCBI-ProteinID:
ABG31284
RoseoBase:
RD1_1659
UniProt:
Q169Q9
LinkDB
All DBs
Position
complement(1593682..1595061)
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AA seq
459 aa
AA seq
DB search
MSTNPPDLRPDLAPKARLTQPDRPGQPTIGMVSLGCPKALVDSERILTRLRAEGYGISPD
YDGADAVIVNTCGFLDSAKAESLSAIGEALNENGRVIVTGCLGAEPEYITGAHPKVLAVT
GPQQYEQVLDAVHAAVPPSPDPFVDLLPATAVSLTPRHFSYLKISEGCNHKCKFCIIPDM
RGRLASRPAHAVMREAEKLVDNGVRELLVISQDTSAFGVDIKHAEERGHRAHITDLARDL
GSLGAWVRLHYVYPYPHVRQLIPLMADGLVLPYLDIPFQHAHPDVLRRMARPAAAAKTLD
EIAAWRAICPDLTLRSTFIVGYPGETEEEFQTLLDWLDEAQLDRVGCFQYENVAGARSNA
LPDHVPEDVKQDRWNRFMAKSQDISEAKLAAKVAQRLEVIVDEVDADAATCRTKADAPEI
DGNLFIDDGHDGLKPGDIVTVEVDEAGEYDLWGRLAPSA
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaaacccaccagacctgcgccccgatcttgcgcccaaagcccggctgacgcaa
ccggaccgtcccggacagccgacaatcggcatggtcagcctcggctgccccaaagcactt
gtcgacagtgaacgcattttgacgcgattgcgcgcggaaggctacggcatatcaccggat
tatgatggggcggatgcggtcatcgtgaatacctgcggatttctggacagcgccaaggcg
gaatcgctttctgccatcggggaagcgctaaatgagaacggccgggtgatcgtcacgggc
tgtctgggcgctgagcccgagtacatcacaggggcgcacccaaaggtgctggcagtgacc
ggcccgcaacaatacgaacaggtgctggatgcggtgcatgccgccgtgccgcccagcccg
gacccttttgttgatctcttgcctgcaacggcggtcagcctgacaccgcgccatttcagc
tatctgaagatttccgagggctgcaatcacaagtgcaaattctgcatcatccctgacatg
cgcgggcgtctggccagccgtccggcccatgcggtgatgcgggaagcggaaaagctggtc
gacaacggcgtcagggaactgctggtcatcagtcaggacacatcggcctttggcgtggac
atcaaacacgccgaggagcgcgggcaccgcgcccacatcaccgaccttgcacgcgacctc
ggatcgctgggggcatgggttcggctgcattacgtctatccctacccccatgtgcgccag
ttgatcccgctgatggcggacggtttggtgctgccctatctggacatcccctttcagcac
gctcatccggatgtgttgcgccgcatggcacgccctgccgctgctgcaaaaacgctggat
gaaatcgcggcttggcgcgcgatttgtccggacctgacgctgcgctcgacctttatcgtg
ggctatcccggcgaaacggaggaagagtttcagacccttcttgactggctggacgaagcg
caactggaccgggtcgggtgctttcaatatgaaaacgtcgccggtgcacgctcaaacgcg
ctgccggatcatgtgcccgaggacgtgaagcaggaccgctggaaccggttcatggccaag
tcgcaggacatctctgaagcgaaactcgccgcgaaagtcgctcagcgccttgaggtgatc
gtggatgaggtggacgctgatgccgccacctgccgcaccaaagccgatgcgccggaaatc
gacggcaacctgttcattgatgacggccacgatggcttgaaaccgggcgacatcgtcacg
gtcgaggtcgatgaggcaggtgaatacgacctgtggggacgccttgcgccatcggcgtaa
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