Roseobacter denitrificans: RD1_1859
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Entry
RD1_1859 CDS
T00376
Name
(GenBank) dipeptide ABC transporter, substrate-binding protein, putative
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
rde
Roseobacter denitrificans
Pathway
rde02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RD1_1859
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rde02000
]
RD1_1859
Transporters [BR:
rde02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
RD1_1859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
Motif
Other DBs
NCBI-ProteinID:
ABG31470
RoseoBase:
RD1_1859
UniProt:
Q168X3
LinkDB
All DBs
Position
1779379..1780902
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AA seq
507 aa
AA seq
DB search
MLLIKRMAAAAVFALGLAGPTLAQEGSFTISVTFGPTAEVPDPRAGYNGWMSNQTGVTET
LMGIDYDLNLYPRLAENIAQIAPTQWRVTLREGLQFHDGSPVTAQAVIDAIAPISQADHP
GYNARIARVLDLAGMSAQDDRTVVFETNSPNAAFQWSLSDPGVAILGAASEAFPINATGP
YVFREAIVDQLYRVEANPDYRLGAPGFEEVRVAASPDPAAAALAFEAGEVDLVINYPETD
FERIQETGALGFTAPTARLYFYSMNTASGPLANPLIRRAVSLAIDRDGIVEAVLSGVGGV
PAGTIYPAGKSWAADIAPTYDPARAEALLSEAGAVKRGGRWMLDGEPIEIDILTYSSRAA
LPPTAEITQAFLQQIGITARVRVGEYGASNDAMLAGEGDMFLQAWVMLPQGDPGSVLGFL
LASDGGANSGRYANPALDELLIKGQTTFEQSERERIYDEVQQIIATDVPLIPVFHVSQAN
VARAGLTGYAVHPTETYWLTHETALSE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgttacttatcaaacgcatggccgctgctgcggtatttgcgctggggctggccggtccc
acgcttgcgcaggagggcagttttaccatctccgtcacctttgggccaacggccgaggtg
cccgacccgcgggcaggctacaacgggtggatgtcaaatcagaccggtgtgactgaaacc
ctgatgggcattgattatgatttgaacctctacccgcgccttgccgaaaacatcgcgcag
atcgcgcccacgcagtggcgtgtcaccctgcgcgagggtcttcaattccatgacggatcg
ccggtgacggcgcaggccgtcattgacgcgattgctccgatttctcaggcggatcatcca
ggttacaacgcccgcattgcccgcgtgctggatctggcgggaatgtcggcgcaggatgac
aggactgtggtgtttgaaacaaacagcccgaatgccgccttccagtggagcctgtcggac
cccggtgtggccatactcggcgcagcctccgaggcgtttccgatcaatgcgaccgggcct
tatgtgttccgtgaggccattgtggatcagctctaccgcgttgaggccaatcccgactac
cgccttggcgcgccgggttttgaggaagtgcgcgttgctgcctcaccggacccggcagcc
gcagccctcgcgtttgaagcgggggaggttgatctggtcatcaactatccggaaaccgat
tttgaacggatacaggagacgggtgcgcttggcttcacggcccccacggcacggctttac
ttctattcgatgaacacggcatccggtccgctggccaaccctttgatccgccgcgccgtt
tcactggcgattgatcgtgatggcatcgtcgaggcggtgttgtcgggcgtgggcggcgtg
cctgcgggcaccatctacccggcgggcaaaagctgggcggctgacatcgcccccacctat
gaccccgcgcgcgcagaggccttgttgagcgaggccggtgccgtcaaacggggcgggcgc
tggatgctggacggtgaaccgattgagatcgacatcctgacctattcctcgcgtgccgcg
cttcccccgacagccgaaatcacgcaggcgttcctgcagcagatcggcattacggcgcgc
gtccgggttggcgaatatggcgccagcaatgatgcgatgctggccggggagggggatatg
tttctgcaggcttgggtgatgctgccgcagggtgatcccggttcggttctcggctttttg
ctggccagcgatgggggggcgaattcggggcgctatgcgaatcccgccttggacgaacta
ttgataaaggggcaaaccacctttgagcagtccgagcgtgagcggatttatgatgaggtt
cagcagatcatcgcgacagatgtgccgctgatccccgtctttcacgtcagtcaggccaat
gtggcgcgcgcgggcttgacgggctatgccgttcatccgacagagacttactggcttaca
catgagaccgctttgagcgaatga
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