Roseobacter denitrificans: RD1_2028
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Entry
RD1_2028 CDS
T00376
Symbol
pccB
Name
(GenBank) propionyl-CoA carboxylase, beta subunit
KO
K01966
propionyl-CoA carboxylase beta subunit [EC:
6.4.1.3
2.1.3.15
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00280
Valine, leucine and isoleucine degradation
rde00630
Glyoxylate and dicarboxylate metabolism
rde00640
Propanoate metabolism
rde01100
Metabolic pathways
rde01110
Biosynthesis of secondary metabolites
rde01120
Microbial metabolism in diverse environments
rde01200
Carbon metabolism
Module
rde_M00373
Ethylmalonyl pathway
rde_M00741
Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
RD1_2028 (pccB)
00640 Propanoate metabolism
RD1_2028 (pccB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
RD1_2028 (pccB)
Enzymes [BR:
rde01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.3 Carboxy- and carbamoyltransferases
2.1.3.15 acetyl-CoA carboxytransferase
RD1_2028 (pccB)
6. Ligases
6.4 Forming carbon-carbon bonds
6.4.1 Ligases that form carbon-carbon bonds (only sub-subclass identified to date)
6.4.1.3 propionyl-CoA carboxylase
RD1_2028 (pccB)
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Motif
Pfam:
Carboxyl_trans
ACCA
MdcE
Motif
Other DBs
NCBI-ProteinID:
ABG31631
RoseoBase:
RD1_2028
UniProt:
Q168G2
Structure
PDB
PDBj
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All DBs
Position
1936990..1938522
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AA seq
510 aa
AA seq
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MKDILEQLEDRRAAARLGGGQKRIDAQHGRGKLTARERVDLLLDEGSFEEFDMFVTHRCT
DFNMQDQKPAGDGVVTGWGTINGRVVYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNGA
PVIGINDSGGARIQEGVDSLAGYGEVFQRNIMASGVVPQISMIMGPCAGGAVYSPAMTDF
IFMVKDSSYMFVTGPDVVKTVTNEQVSAEELGGATTHTRKSSVADAAFENDVEALAEVRR
LVDFLPLNNREKPPVRPFFDDPDRIEPSLDTLVPDNPNTPYDMKELIHKLADEGDFYEIQ
EEFAKNIITGFIRLEGRTVGVVANQPLVLAGCLDIDSSRKAARFVRFCDAFEIPLLTLID
VPGFLPGTSQEYGGVIKHGAKLLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNY
AWPTAEVAVMGAKGATEIIHRGDLGDPEKIAQHTADYEERFANPFVASERGFVDEVIQPR
STRKRVARAFASLRNKSVQMPWKKHDNIPL
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacatccttgagcaactcgaagatcgccgggcagctgcccgattgggtggcggg
caaaagcggatcgatgcacagcacggtcgtggcaagttgacggcgcgtgaacgtgtggac
cttttgcttgatgagggcagctttgaagagttcgacatgttcgtcacgcaccgctgcacc
gatttcaacatgcaagatcaaaagcctgcgggcgatggtgttgttacgggctgggggacg
atcaacggacgggttgtctatgtcttcagtcaggacttcaccgtgcttggcggttcggtg
tccgaaacccattccaagaaaatctgcaagatcatggatatggcgatgcagaacggggcc
ccggtgattgggataaacgactcgggcggcgcgcgcattcaggagggtgttgattccctt
gcgggttatggcgaggttttccagcgcaacatcatggcgtcgggcgttgtgccgcagatc
agcatgatcatggggccttgtgcgggcggtgcggtttattctccggcgatgactgacttc
atcttcatggtcaaagacagctcttatatgtttgtgaccggacccgacgtggtcaagacc
gttacaaatgaacaggtctctgcggaagagttggggggcgccacgacgcatacccgcaag
tcatcggtggccgatgccgcttttgaaaacgatgtggaagccttggccgaagtgcgtcga
ctggtcgatttcctgcctctgaacaaccgcgaaaagccgccggtacgaccgttttttgat
gatccggaccggatcgagccctcgctggacacgcttgttccggacaatccgaatacgcct
tacgatatgaaggagctgatccataagctggcggatgagggtgacttttacgaaatacag
gaagagttcgcaaaaaacatcatcacaggcttcatccgtcttgaggggcgcacggtgggt
gttgtcgccaaccaaccccttgttctggcgggatgtctggacattgacagctcgcgcaaa
gcggcgcgtttcgtgcgcttttgtgacgccttcgaaatcccgctgctcaccttgattgac
gtgcccggcttcctgcccggcaccagccaggagtacggaggtgtgatcaaacacggtgcc
aagctgctttacgcctatggtgaagcaacggtgccgatggtgacggtcatcacacgcaaa
gcctatggcggtgcctatgtcgtgatgtcatccaagcacctgcgcgctgatttcaactac
gcctggccaaccgccgaagtcgcggtgatgggggcgaagggggccactgagatcattcac
cgcggtgatctgggtgaccctgagaaaatcgcgcaacatacggctgactacgaagagcgt
tttgccaacccctttgtcgcctccgagcgcgggtttgtggatgaggtgattcagccgcgc
agcacccgaaagcgtgtggcgcgggcctttgcctccttgcgcaacaagtcggtacagatg
ccgtggaaaaagcacgataacatcccactgtaa
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