Roseobacter denitrificans: RD1_2070
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Entry
RD1_2070 CDS
T00376
Symbol
truA
Name
(GenBank) tRNA pseudouridine synthase A
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
rde
Roseobacter denitrificans
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rde03016
]
RD1_2070 (truA)
Enzymes [BR:
rde01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
RD1_2070 (truA)
Transfer RNA biogenesis [BR:
rde03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
RD1_2070 (truA)
Prokaryotic type
RD1_2070 (truA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-ProteinID:
ABG31672
RoseoBase:
RD1_2070
UniProt:
Q168C1
LinkDB
All DBs
Position
complement(1976973..1977755)
Genome browser
AA seq
260 aa
AA seq
DB search
MHRYALKVEYNGAPFVGWQRQKEHPTIQGAIERALGKIAPGPHTIAAAGRTDAGVHAIAQ
VAHCDLERDWDPFRLSEALNYHLKPAPIAITACTAVDAEWHARFSARQRQYLFRILCRRA
PATHQKGLVWQVKQKLDVTAMREAAALLIGQHDFTTFRSTICQAESPVKTLDRLDVNEVD
TPYGREIHFDVRARSFLHNQVRSFVGTLERVGAGSSTPQDVARALALRDRAACGPVCPPH
GLYLAHVVYDRPPFEAERSI
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgcacagatacgccctcaaagtcgaatataacggtgcgccctttgtcggatggcagcgt
caaaaagaacaccccaccattcagggggcgattgagcgcgcgttgggcaagatcgcgccg
ggcccgcacacgatcgcggctgcagggcgcacggatgcgggtgtgcatgcgatcgcgcag
gtggcgcattgtgatcttgagcgcgactgggacccctttcgtctgtcggaagcgttgaat
taccacctcaaacccgcgcccatcgccatcaccgcctgcacagccgtggacgcggagtgg
cacgcaaggttttccgcgcgccaacgtcagtatctgtttcgcatcctgtgccgccgcgcc
ccggccacccaccaaaaagggttggtgtggcaggtgaaacagaagcttgatgtaaccgcc
atgcgcgaagccgcggcgctgctgatcggccagcatgatttcacgacattccgctccacc
atctgtcaggcggaaagcccggtcaaaacgctcgaccggctggatgtgaacgaagtcgat
acgccctatggccgtgagattcatttcgacgtgcgcgccagatccttcctgcacaatcag
gtgcgcagcttcgtgggcacgctggaacgggttggggccgggtcgtccacaccgcaggat
gtggcaagggcgctggccttgcgggaccgcgccgcctgcgggccggtttgcccgccccat
ggcctctatctggcgcatgtggtttacgaccgcccgccctttgaggcggagcgatcgatc
taa
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