Roseobacter denitrificans: RD1_2204
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Entry
RD1_2204 CDS
T00376
Symbol
icd
Name
(GenBank) isocitrate dehydrogenase, NADP-dependent
KO
K00031
isocitrate dehydrogenase [EC:
1.1.1.42
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00020
Citrate cycle (TCA cycle)
rde00480
Glutathione metabolism
rde00720
Other carbon fixation pathways
rde01100
Metabolic pathways
rde01110
Biosynthesis of secondary metabolites
rde01120
Microbial metabolism in diverse environments
rde01200
Carbon metabolism
rde01210
2-Oxocarboxylic acid metabolism
rde01230
Biosynthesis of amino acids
rde04146
Peroxisome
Module
rde_M00009
Citrate cycle (TCA cycle, Krebs cycle)
rde_M00010
Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
RD1_2204 (icd)
09102 Energy metabolism
00720 Other carbon fixation pathways
RD1_2204 (icd)
09106 Metabolism of other amino acids
00480 Glutathione metabolism
RD1_2204 (icd)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
RD1_2204 (icd)
Enzymes [BR:
rde01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.42 isocitrate dehydrogenase (NADP+)
RD1_2204 (icd)
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Motif
Pfam:
IDH
Motif
Other DBs
NCBI-ProteinID:
ABG31798
RoseoBase:
RD1_2204
UniProt:
Q167P5
LinkDB
All DBs
Position
complement(2103330..2105552)
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AA seq
740 aa
AA seq
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MSDTTTPDIIYTKVDEAPQLASASLLPIIRKFAAAAGVSVGVKDISLAGRILAAFPEHLS
ADQRQSDDLAELGKLVKTPDANVIKLPNISASVPQLVAAIEELQAQGYPVPDYPENPQTE
ADKDARARYDTIKGSAVNPVLREGNSDRRAAVAVKNYAQSNPHSMGAWSKDSKTRVSTMS
ANDFRSNETSVTLSAAQAGPAKIELIGADGAVTVLKDGIDFPAGTVVDATFMSAKALSAF
LEAQIEATKAEGTLFSIHLKATMMKVSDPIIFGHAVKAYLKPIFAEYGDAFAAAGIDANS
GMGEVLDRIKDLPQGAEILSKVDALMQQQPPMYMVNSDKGITNLHVPSDVIIDASMPALI
RAGGKGWGPDGAEADANCVIPDSSYAAVYEESVNFCKTNGAIDPATVGTVQNVGLMAQKA
EEYGSHPTTFEIPHDGTVRMSAANGDVLHEHTVEAGDIWRSASTRQAPIEDWVQLAIDRQ
KAEGCQAIFWLDEDRAHDAELIAYVKPLLAAAGATDKFQILAPREATRLSFETIAKGENS
IAVTGNVLRDYLTDLFPILELGTSAKMLSIVKLMQGGGLFETGAGGSAPKHVQQLVEENH
LRWDSLGEFCALGESLKFLADVKGNEKARVLGKAVDVATQGILDHNKSPGRRVGQPDNRD
SHFYFALYWAQALAAQTDDAELAASFAPIAAALAENEAAIVADFAKVQGAPADIGGYFHT
DDAKTAAVMRPSQVLNKILA
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatacaaccactcccgacatcatctacaccaaagttgacgaggcaccgcagctc
gcatccgcgtcgcttctgccgatcatccgcaagttcgcagccgccgccggcgtttcggtg
ggggtcaaggatatctcgctcgccgggcgcatcctcgccgcattccccgagcatttgtca
gccgatcaacgccaaagcgatgatttggcggaactgggtaaactggtgaagacaccagat
gccaatgtcatcaaactgccgaatatttccgcctcggtcccgcaactggtcgctgcgatc
gaggaactgcaagcgcaaggatacccggtgccggactatccggaaaacccgcagacagag
gccgacaaggacgcgcgcgcgcgctacgacacgatcaaggggtccgcagtcaacccggtg
ctgcgcgaaggaaactcggaccgtcgtgccgcagttgccgtgaagaattacgcccaatcc
aacccgcattccatgggcgcatggtcgaaagacagcaaaacccgcgtcagcaccatgagc
gccaatgactttcgatccaatgaaacatccgtgaccctgagtgccgcgcaggcaggccct
gccaagatcgaactgatcggcgcggatggtgccgtgacagtgctgaaagacggcattgat
tttccggcaggcacagtggtcgatgccaccttcatgtctgccaaggcgctctcggctttc
ctcgaggcacagattgaggccaccaaggcagagggtacgttgttctcgatccacctcaaa
gccacgatgatgaaggtgtccgacccgatcatctttggtcatgcggtcaaagcctatctg
aaaccgatctttgccgaatatggcgatgcttttgctgcggccggaattgatgcaaactcc
ggtatgggcgaggtgctggaccgcatcaaggacttgccgcaaggtgctgaaatcctgtcg
aaagtggatgcgctgatgcagcagcagcccccgatgtacatggtgaattccgacaagggc
atcaccaatttgcacgtcccctccgatgtgatcatcgacgcctccatgcccgcgctgatc
cgtgccggcggcaaaggctgggggccggacggggccgaagcggatgcaaattgcgtcatt
cctgacagctcctatgcggcggtctatgaggaatcggtgaatttctgcaagaccaatggc
gcgatcgaccctgccactgtgggcaccgtgcaaaacgtgggcctgatggcgcaaaaggcc
gaggaatacggctcgcacccgaccactttcgaaatcccccatgacgggacggtgcgcatg
agcgccgccaacggtgatgttctgcacgaacatacggtcgaggctggcgacatctggcgt
tccgcctccacccgccaggccccgatcgaggactgggtacaactggcgatcgaccgccag
aaggccgaagggtgtcaggcgatcttctggctcgacgaagatcgcgcccacgatgcggag
ctgatcgcctatgtgaaacccttgcttgccgctgcgggggccaccgacaaattccagatc
ctcgccccccgcgaggccacacgcctgtcctttgaaaccattgccaagggcgaaaacagc
attgccgtcaccggcaacgtgctgcgcgactatctgacggacctgttcccgatccttgag
ttgggcacatcggccaagatgttgtcgatcgtgaaactgatgcagggcggtggtctgttt
gagaccggtgcaggtgggtcagccccaaagcacgtgcagcaactggtcgaggaaaaccac
ctgcgctgggacagccttggtgaattctgcgccttgggggaaagcctgaagtttctggca
gacgtcaaaggcaacgaaaaggcccgcgtgctcggaaaggccgtagacgtggcgacccaa
ggcattctggatcacaacaaatcacccggccgccgggttggtcagcccgacaaccgcgac
agccacttctattttgcgctctattgggcgcaggcactggccgcgcagaccgacgatgcg
gaacttgcagccagttttgcgcccatcgcagcggcactggccgagaatgaggccgcgatt
gtggctgattttgccaaagtacagggcgcgcctgccgacatcggtggctattttcacacc
gatgacgccaagaccgctgccgtgatgcgaccgtcacaggttctgaacaaaattctggcc
tga
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