KEGG   Roseobacter denitrificans: RD1_2235
Entry
RD1_2235          CDS       T00376                                 
Name
(GenBank) type I restriction enzyme subunit, putative
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
rde  Roseobacter denitrificans
Brite
KEGG Orthology (KO) [BR:rde00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:rde02048]
    RD1_2235
Enzymes [BR:rde01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     RD1_2235
Prokaryotic defense system [BR:rde02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   RD1_2235
SSDB
Motif
Pfam: ResIII EcoEI_R_C SWI2_SNF2 DEAD Helicase_C HSDR_N nSTAND3 HSDR_N_2 AAA_7
Other DBs
NCBI-ProteinID: ABG31825
RoseoBase: RD1_2235
UniProt: Q167L8
LinkDB
Position
2137358..2139706
AA seq 782 aa
MVEHSSLATETEADTRAQRIDPALAAAGWEGAGKIDGARVHREEMLWPGRIMSGGGQNAP
KPADYVLRMKGHVMAVLEAKKASLSYTEGRGQALDYARRIGARFAYCTNGLRTYEIDLNT
GTEGEVEAVPSPDVLWERCYPTGNAWRDRFGQIPFETDGGKWQPRYYQAAAVNAVLEALA
QDEKRILLTLATGTGKTSIAFQIAWKLFQSRWNLSGAPTRRPRILFLADRNILADQAYNS
FSAFAPDALSRINPKEISKKGKMPRNASVFFTIFQTFMTENKSGEAEFNFREYEPDFFDF
IIIDECHRGGAKDESSWRGILEYFAPAVQLGLTATPKRKVNADTYTYFGEPVYTYALREG
IDDGFLTPFKVRQMASTIDTYVYDPEDEVVGGDVDPDHEYTEDEINAKIVIPAREQSRIH
EFMDQINPRQKTLVFCATQNHAAAVCDYINQIKDIEDPHYCERVTANDGALGEQHLREFQ
DNERSIPTILTTSQKLSTGVDARNVRNIVLMRPIKSMVEFKQIVGRGTRTFEGKDFFTIY
DFVKAYEHFNDPEWDGPPEPPDTPGTPPKPPKPGDPVPPGDPPPTPPEPEEKIVIKLADG
KERRIKYIATTSYYSHDGKMISGEEFMEQLFGDLGDLVTGEEELRLIWSDPEKRVQFLKV
LADRGYDTGRLEDMKRLIDAPNSDVFDVLAYVRFTLSPKLRSERAAAARENGLTGLESEM
KAFLEAVLNAYEVHGVEELALPKISDFLKVKYGGTNGAKRVLGDIPKIRRAFTEIQAHIY
SS
NT seq 2349 nt   +upstreamnt  +downstreamnt
atggttgaacattcttcccttgccacagagaccgaagcggacacgcgcgctcagcggata
gaccctgcgcttgccgccgccggatgggaaggcgcgggaaagatcgacggcgcgcgggtg
catcgcgaggaaatgctctggcccggtcgcatcatgtcgggcggtgggcagaacgcgccc
aaacccgctgactacgtgctgcgcatgaagggccacgttatggctgtgttggaggccaag
aaagcctcgctatcctatactgaagggcgcggccaagccctcgactatgcccgcaggatc
ggcgcgcgctttgcctattgcactaatggactgcgcacctacgagattgacctcaacacg
ggcaccgaaggcgaagttgaggcagtcccatcgcccgacgtgctctgggagcggtgctat
cccaccgggaacgcatggcgcgaccgtttcggtcagatcccttttgagactgatggcggc
aaatggcagccccgctactatcaggcggcggctgtgaatgccgtactggaagcgttggcg
caagacgaaaagcgcatcctattgaccctcgccactggcaccggcaaaacttccatcgcc
ttccaaatcgcatggaagttgtttcaatcgcggtggaacctttctggcgcgcccacacgt
cgcccgcgcatcctgttccttgctgaccgcaatatcctcgcggatcaggcgtacaattca
ttctccgctttcgcgcctgatgcactgtcgcggatcaatccaaaagagatcagcaagaag
ggcaagatgccccgcaatgcgagtgtcttcttcacgatcttccagaccttcatgacggaa
aacaaatctggtgaggcagagtttaactttcgcgaatacgagcctgatttctttgacttc
atcatcattgacgaatgtcaccggggcggtgcgaaggacgaaagctcttggcgcggtatt
ctagagtatttcgcacctgctgtgcagcttggtttgacagcgacgcccaagcgcaaggtg
aacgccgacacctacacctatttcggcgaaccggtgtatacatacgccctgcgcgaaggc
attgatgacggcttcctcacgcccttcaaagtgcgccagatggccagcacgattgatacc
tatgtctatgacccggaggatgaggtcgtcggtggcgacgtggaccccgatcatgaatac
acagaagatgagatcaacgcgaaaatcgtcattcctgcgcgcgagcaaagtcgcattcat
gaattcatggatcagatcaacccacgccagaagacgctggtgttctgtgcaacccagaac
cacgcggcggcagtgtgcgactacatcaaccagatcaaggacatcgaagacccgcactat
tgcgagcgcgtaacggcgaatgacggcgctctgggcgagcaacacttgcgcgagtttcag
gacaatgagcggagcattccaacaattctgacgacatcgcagaagctttccaccggggta
gatgcgcgcaacgtccggaacatcgtcctaatgcggcctatcaagtcgatggtggagttc
aagcagatcgttgggcgcggaacacgtaccttcgaaggcaaagacttcttcaccatctac
gacttcgtgaaagcatatgagcatttcaacgatccggaatgggatggcccacccgaaccg
ccggacactccgggaacgccaccgaaaccgccgaaaccgggcgaccctgtgccccctggc
gatccaccaccgaccccgccggaaccggaagagaaaatcgtgatcaagcttgctgacggc
aaggaacgtcggatcaagtacatcgcgacaacgagttactattcacacgacggcaagatg
atctccggtgaagagttcatggaacagcttttcggggatctaggcgatcttgtgaccggc
gaagaagaactgcggttaatctggagcgatccggaaaagcgtgtgcagtttctgaaggtg
ttggcagacagaggctacgacactgggcggcttgaggatatgaagcgcctcattgacgct
ccgaacagcgatgtgttcgacgttctggcctatgtccgtttcactctttcgccaaagttg
agatcagaaagagcagcggcggcgcgtgagaatggcttgactggcctcgaaagtgaaatg
aaggcatttcttgaagcggtgcttaacgcctatgaagttcacggggtcgaagagcttgcc
ttgccaaagatcagtgatttcctgaaggtgaagtatggtggcacgaacggagcaaagcgc
gtacttggcgacataccgaaaatcaggcgcgcgttcacagaaattcaggcccatatctac
tccagttag

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