Roseobacter denitrificans: RD1_2254
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Entry
RD1_2254 CDS
T00376
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rde
Roseobacter denitrificans
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rde03016
]
RD1_2254 (rnd)
Enzymes [BR:
rde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
RD1_2254 (rnd)
Transfer RNA biogenesis [BR:
rde03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RD1_2254 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Sf6_terminase
Motif
Other DBs
NCBI-ProteinID:
ABG31841
RoseoBase:
RD1_2254
UniProt:
Q167K2
LinkDB
All DBs
Position
2157298..2158461
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AA seq
387 aa
AA seq
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MKTITTTQALAEFCTQAAQFDYVTVDTEFLRERTYYSKLCLIQLAMPGEDDSTGCIVDPL
APGLSLEPLYALFRDTSVVKVFHAARQDLEIFYVDAEVFPEPLFDTQVAAMVCGFGEQVG
YETLVRRIAKKPLDKTSRFTDWSRRPLTDAQMKYALADVTHLREVYEFLAEKLEETGRSR
WVREELTVLTSPETYIIAPMDAWRRVKTRTNSPKFLAVVRELAAFRETYAQERNVPRNRV
FKDDALIELASNKPKTQEELGRSRLLLREGRRGDVADGILQAVKRGVECPQQDMPKPDRS
RDKLQVNPALADLLRVLLKAKTESAGVAAKLIAPAADLDAIAAGLRDVPALNGWRREVFG
EDALRLCEGKIALAAEGANVRIVNLDA
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccatcacaacgacacaagcgctggccgagttctgcacgcaggcagcccagttc
gattatgtgacggtcgacacggaattcctcagagagcgcacgtattattccaagctgtgc
cttatccagcttgccatgccgggggaggatgacagcaccggctgtatcgtggacccgctc
gcgccggggttgtcgcttgaaccgctctatgcgctgtttcgcgacacatccgtggtcaag
gtgtttcacgccgctcggcaggatctcgaaatcttttacgtcgatgccgaagtctttccc
gagccgttgtttgacacgcaggtcgcagccatggtctgcggctttggcgagcaggtgggc
tatgaaacgctggtgcgccggattgccaaaaagccgctggacaagacctcacgctttacc
gattggtcgcgccgcccgttgacggatgcgcagatgaaatatgccttggccgatgtcacc
catctgcgggaggtctatgagtttctggcagaaaagctcgaagaaaccgggcgcagccgc
tgggtgcgtgaggagttgaccgttctgaccagcccggaaacctatatcattgcaccgatg
gacgcgtggcggcgggtgaaaacgcgcaccaattcgcccaagtttctcgccgtggtgcgg
gagttggcagctttccgcgagacctatgcgcaggagcgcaacgtcccccgtaaccgtgtg
ttcaaggatgatgcgctgatcgaactggcctccaacaagccaaagacgcaggaagaactg
gggcgctcgcggctgctgctgcgcgaggggcggcgcggcgatgtggcggatggtatctta
caggcggtcaagcgcggtgtggaatgcccgcaacaggacatgcccaaaccggatagatca
cgcgacaagctgcaggtgaaccctgcgctggcggatctgttgcgcgtcctgctcaaggcc
aagacggaaagcgcgggtgttgcggccaagctgatcgctcctgcagcggaccttgatgcg
atcgccgccggcctgcgcgatgtgccggcactcaacggatggcggcgcgaggtgtttggc
gaggatgcgctgcggctctgtgagggaaagattgcccttgctgcggaaggggcaaatgtg
cgtatcgtcaaccttgacgcatga
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