Roseobacter denitrificans: RD1_2267
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Entry
RD1_2267 CDS
T00376
Symbol
rne
Name
(GenBank) ribonuclease E, putative
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rde
Roseobacter denitrificans
Pathway
rde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RD1_2267 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rde03019
]
RD1_2267 (rne)
03009 Ribosome biogenesis [BR:
rde03009
]
RD1_2267 (rne)
Enzymes [BR:
rde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RD1_2267 (rne)
Messenger RNA biogenesis [BR:
rde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RD1_2267 (rne)
Ribosome biogenesis [BR:
rde03009
]
Prokaryotic type
rRNA processing factors
RD1_2267 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ABG31853
RoseoBase:
RD1_2267
UniProt:
Q167J0
LinkDB
All DBs
Position
2168060..2170819
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AA seq
919 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALMEEERAYAEAQKAKEDEDEKPKRRRSRSRTK
AKGEDTTSEDVVATKDVESDQIDGMETIDLDDSEEGSSPMERVAETPVEEPEGDDASAEA
AQTADASDDQDAQAASEDASEDDTATEDGDDDDDDDDDAPRKSDASSKDDTIESVADDDD
QDDIRPVRKPRPRRYKIQEVIKVRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNT
ARGGGISRKITNAADRKKLKEIANEIEVPQGAGLIVRTAGAKRTKAEIKRDYEYLQRLWE
QIRELTLKSVAPAKIYEEGDLIKRSIRDLYNREIDEVFVEGERGYRIAKDFMKMIMPSHA
KNVKLYTEGLPLFARYQVESYLASMFNPTVQLPSGGYIVIGVTEALVAIDVNSGRATKEG
SIEQTALKTNLEAADEVARQLRLRDLAGLIVIDFIDMDERKNNTSVEKRMKDKLKTDRAR
IQVGRISGFGLMEMSRQRLRPGMIEATTQPCQACHGTGLIRSDDSLALSILRQIEEEGTR
KRSREVLIKAPVGIANFLMNQKREHIAHIEARYGLSVRIEGDPMLVSPDFSLEKFKTATR
VVSVAAQHVVSVDTSLMDQVDADDDEAPAETADNGAETANKENNVENDGEDRPKRRRRRR
RRRNKNGNGETQTASDETNAEASEAQGAKTPKKAEPAADSPVEAPAAQTDDAPAPAAEQE
EAPAKPKRTRSRTRKPKVEADTQDAPEAEAKAETAAPVEETAPAEATEETPAKPKRKRAS
RAKKAAPVEAAPDAEPAPVAQDAEPAPSSQEAAAAPVAEEPAPAAPEPEPAGAEPEPVVA
EAAPEPAKPKRRGWWSIGG
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atggctaagaaaatgcttatcgatgccacccacgcggaagaaacccgcgttgtggtggtg
gatggaaacaaggttgaagagttcgattttgaatccgaaaacaaacgccagcttgctggc
aacatctatcttgcaaaagtaacacgggttgagccgtccttgcaggcggcctttgtggag
tacggggggaaccgtcatggtttcctcgccttttcagaaattcatccggattattaccag
attcccgtcgcggaccgtcaggccctgatggaagaagagcgcgcctatgccgaagcgcaa
aaggccaaggaagacgaggacgaaaagcccaaacgtcgcagatcgcgcagccgcacaaag
gccaagggcgaagacaccacgtcagaggatgtggtcgcgacgaaggatgtggagtccgac
cagatcgacggcatggaaaccattgatctggatgacagcgaagaggggtcctctccgatg
gagcgggtcgccgagacacctgtcgaagagcccgagggcgatgatgcaagcgcggaggct
gcgcagacggctgacgcgtccgatgatcaggacgcgcaagcagcgtctgaggatgcctcg
gaagacgataccgcgactgaagatggcgacgatgatgacgacgacgacgatgatgcgccg
cgcaaatctgatgcatcctccaaggatgacaccatcgaatccgtcgcggatgacgatgat
caagacgatatccgccccgtgcgcaaaccccggccacggcgctataaaattcaggaagtc
atcaaggtccgccagattctgctcgtgcaggtcgtcaaggaagagcggggcaacaagggc
gcggcgctgaccacatacctcagccttgcagggcgctattgcgtcctgatgcccaacacg
gcgcgcggcggtggtatttcgcgcaagatcacgaatgctgcggaccgcaagaagctcaag
gagatcgcaaatgagatcgaagtgccgcaaggcgcgggtctcatcgtgcgcaccgccggg
gccaaacgcaccaaggccgagatcaaacgcgactacgaatatctgcaacgcctgtgggag
cagatccgcgagttgacgctgaaatccgtcgcgcccgccaagatctacgaagagggagac
ctgatcaaacgctcgatccgcgatctctacaaccgcgagattgacgaggtgtttgtcgaa
ggtgaacggggctaccgcatcgccaaggacttcatgaagatgatcatgccgtcccatgca
aaaaacgtgaaactctataccgaaggtctgccgcttttcgcccgctaccaggtcgaaagc
tatcttgcgtcgatgttcaacccgactgtgcagcttccgtcgggggggtatatcgtgatc
ggcgtgaccgaggctctggtggcgattgatgtgaactccgggcgggccaccaaggagggc
tcgatcgagcagaccgcgctcaagaccaaccttgaggccgccgacgaagtggcgcggcag
ttgcgcctgcgggacctcgcgggcctgatcgtgatcgacttcatcgacatggatgagcgc
aagaacaacacctccgtcgaaaagcgcatgaaagacaagctcaagacggaccgcgcgcgc
attcaagtggggcgtatctccggctttggtctcatggaaatgtcgcgccagcgcctgcgc
cccggcatgatcgaggcaacgacacagccgtgtcaggcctgccatggtacgggcctgatc
cggtccgatgatagcctcgcattgtccatcctgcgccagatcgaggaagagggcacgcgc
aagcggtcccgagaggtgttgatcaaggcgccggttggtattgccaatttcctcatgaac
cagaagcgcgaacatattgcgcatatcgaagcgcgctacgggctgtctgtgcggatcgaa
ggcgaccccatgctggtcagccccgatttcagtcttgagaagttcaagacggccacacgg
gtcgtgtcggttgcagcacaacatgttgtttctgttgatacctcattgatggatcaggtg
gatgcggacgacgatgaggcgccagcggaaacggccgataacggcgcagagacggcaaac
aaggaaaacaacgtcgagaatgatggcgaggatcggcccaagcgccgtcgccggcgtcgt
cggcgtcgcaacaagaacggcaatggcgagacgcagaccgcatccgatgagacaaatgcc
gaggcatccgaggcccagggcgctaagactccgaagaaagcggagcctgcagccgacagc
ccggtagaggcgcctgctgcgcaaaccgatgatgcgccagcccctgcggcagagcaggaa
gaggcaccggcaaaacccaaacggacacggtcgcgcacgcgcaaaccgaaagtggaagcc
gacacacaggatgcgccagaagcagaggcgaaagccgaaaccgccgcgccagtggaagaa
accgcacccgccgaagcgaccgaagaaacccctgcaaaaccaaagcgtaaacgggccagc
cgggccaagaaggccgctccggttgaggcggcaccagacgccgaaccagcccccgtggcg
caggacgccgagccggcaccttcatcacaggaagctgcggcggcaccggtggcagaagag
ccagcgccagcagcgcctgaaccggaacctgcaggtgccgagcccgaaccggtggtcgct
gaggccgcgccagagccagccaaaccaaagcggcgcgggtggtggtccatcggaggctaa
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