Roseobacter denitrificans: RD1_2536
Help
Entry
RD1_2536 CDS
T00376
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ, putative
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rde
Roseobacter denitrificans
Pathway
rde03410
Base excision repair
rde03430
Mismatch repair
rde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RD1_2536 (recJ)
03430 Mismatch repair
RD1_2536 (recJ)
03440 Homologous recombination
RD1_2536 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rde03400
]
RD1_2536 (recJ)
DNA repair and recombination proteins [BR:
rde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RD1_2536 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RD1_2536 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RD1_2536 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ABG32093
RoseoBase:
RD1_2536
UniProt:
Q166K0
LinkDB
All DBs
Position
complement(2424974..2426713)
Genome browser
AA seq
579 aa
AA seq
DB search
MSFLGIERSLTGRRWIGPSVEIARAAKTLEQRTDLPAPVCQVLARRGVQAEHAEGFLAPA
LRDLMPDPRSLKDMTKAATRFLNAVQKREKIAIFADYDVDGGSSAALLLAWLRQMGREAT
LYIPDRIDEGYGPNDEAMAQLARSHDLIVCVDCGTLSHGPIAAAAGADVLVLDHHLGTEE
LPDALAVVNPNRQDESGDLGHLCAAGVVFLLLVELRRLLRETGQTGPDLMAFLDLVALAT
VADVAPLVGVNRAFVRQGLKVLARRERVGLTALADVAGVDTEPNAYHLGFILGPRVNAGG
RIGAADLGARLLASDDPHEAAALAERLDKLNTERRDIEAAVRATALAQAEARGLDRPLVW
AAGADWHPGVVGIVASRLKEAAGRPSIVIGITDGIGKGSGRSVAGIDLGQPIHRLAAEGL
LLKGGGHKMAAGLTVEESKIEPAMARLSELLEKQGAGSIGAADLHIDGMLMPQAAAVELV
QKIEQAGPFGAAAPAPRYAFADVAIRYAKRVGENHLKISFGSDAGSMDAICFGAYDTELG
PALEMHGGARFHLAGRLDINTWRGRQSVQLRLEDAACAQ
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgagctttctgggcatagagcgctcgctgaccggcaggcgctggatcggaccctccgtc
gagatcgcgcgcgcggcaaagacccttgaacagcgcacggacctgcccgcgcccgtgtgt
caggttctggcccggcgcggggtgcaggcagagcatgccgagggctttcttgctcccgcc
ttgcgggacctgatgcccgacccgcgcagcctcaaagacatgacaaaggccgctacccga
tttttgaacgccgtgcaaaagcgcgaaaaaatcgcgatttttgcggattatgacgtggat
ggcggcagttccgcagcgctcttgctagcgtggttgcggcagatgggacgcgaggccacg
ctttatattcccgacaggattgatgaagggtacggtccgaatgatgaggcgatggcgcag
cttgcccgcagccatgatctgattgtctgcgtcgattgtggcacgctgtctcatggcccg
atcgctgcggcggcgggcgcggatgtgctggttctggatcatcacctcggcaccgaagag
ctgcccgacgccctcgccgtggtcaatccgaaccggcaggacgaaagcggcgatctgggg
catctgtgtgccgcgggtgtcgtgttccttttgctggtcgaactgcgccggttgctgcgc
gaaacgggccagacgggaccggatctgatggcatttctggatcttgtcgcgctggcgaca
gtggcagatgtggcccctctggtcggggtcaaccgcgcctttgtgcgtcagggtctcaag
gtgttggcgcgacgggagcgggttggcctgaccgcgctcgcggatgtggccggagtggat
accgaacccaacgcctaccaccttgggttcattctggggccgcgcgtcaatgcgggcggg
cggatcggggcggccgatcttggcgcgcgcctgttggcgagcgatgacccgcatgaggcg
gcggcactggccgaacggctcgacaagctgaacacggagcggcgcgacattgaagccgcc
gtgcgcgcaacggccctcgcgcaggcggaggcacgcgggcttgaccgcccgcttgtctgg
gccgccggtgcggattggcaccccggcgtggtggggatcgttgcatcgcggctcaaggag
gccgccgggcggcccagcattgtcatcggcatcaccgatggcatcggcaaagggtcggga
cgatccgttgccggcattgatctgggccagcccatccatcgcctggcagcggagggtctg
cttttgaaaggtggcgggcacaagatggcggcggggcttacggttgaggaaagcaagatc
gaaccggccatggcccgcctgtctgaattgctggaaaaacagggggccggttccattggc
gccgccgatctgcatatcgacgggatgctgatgccccaagccgccgccgtcgaactggtg
caaaagattgaacaggccgggcccttcggtgccgcagcccccgccccgcgctatgccttc
gcggatgtggcgatacgttacgcaaaacgcgtgggcgaaaaccatctcaagatcagcttt
ggcagcgatgcaggctccatggacgcgatttgctttggcgcatacgacaccgaacttggc
cccgccctggaaatgcatggcggcgcgcgctttcatctggccgggcgtctggacatcaac
acatggcgtggacgccaatctgtacagttgcgccttgaagacgcagcatgcgcacaatag
DBGET
integrated database retrieval system
